Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40596
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   124   5e-29
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    29   1.4  
U61946-1|AAC24390.1|  575|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  124 bits (298), Expect = 5e-29
 Identities = 59/77 (76%), Positives = 66/77 (85%), Gaps = 1/77 (1%)
 Frame = +2

Query: 26  MAP-RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGG 202
           MAP RK K  +E+  V+LGPQ   GE +FGVAHIFASFNDTFVH+TD+SGRETI RVTGG
Sbjct: 1   MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60

Query: 203 MKVKADRDEASPYAAML 253
           MKVKADRDE+SPYAAML
Sbjct: 61  MKVKADRDESSPYAAML 77



 Score = 73.3 bits (172), Expect = 9e-14
 Identities = 37/68 (54%), Positives = 42/68 (61%)
 Frame = +1

Query: 250 VGAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPV 429
           + AQDVA++CK LGI ALHIKLRA            AQ          MKIGRIEDVTP+
Sbjct: 77  LAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPI 136

Query: 430 PSDSTRRR 453
           PSD TRR+
Sbjct: 137 PSDCTRRK 144


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 252 WGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSC-SFKYED 401
           W   C+R+    W N +A      WWK+N +  S     T   C SF + D
Sbjct: 488 WKPPCTRDKIFEWMNNVATDFRSEWWKKNNNLHSPNPSGTGQRCLSFAFGD 538


>U61946-1|AAC24390.1|  575|Caenorhabditis elegans Hypothetical
           protein F47C12.4 protein.
          Length = 575

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 252 WGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSC-SFKYED 401
           W   C+R     W+N +A      WWK+N +  S     T   C SF + D
Sbjct: 486 WKAPCTRGKIFEWNNNVATDFREEWWKKNNNNHSPNPSGTGQRCLSFAFGD 536


>Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical
           protein M28.6 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +2

Query: 80  PQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 208
           P H  G T FG  H   + +   + +TDL  R TIA VT G+K
Sbjct: 365 PIHRAG-TQFGFGH---TGHGCQMVITDLKNRVTIAYVTNGLK 403


>Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical
           protein F42A8.1 protein.
          Length = 370

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 175 GNYRPCHWWHEGE 213
           GN RP  WW EG+
Sbjct: 38  GNGRPAQWWQEGD 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,647,750
Number of Sequences: 27780
Number of extensions: 248594
Number of successful extensions: 710
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)