Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40595
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    31   0.15 
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    31   0.19 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   1.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.2  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    26   7.3  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.6  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   9.6  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   9.6  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   9.6  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   9.6  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   9.6  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   9.6  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +1

Query: 334 SSPKTTSPLAAYLNQSQDIGHTQKPALMP--PTMFTAS--SGGDVQPSPQPLTRNQLLQA 501
           S+P+T+SPLA+       +     P L+P  P + T +  +  +V P P  +  N+    
Sbjct: 426 SNPRTSSPLASNAENKPPVAQQSPPVLLPTLPPIQTTTIQTSREVAPPPSSINSNRAASP 485

Query: 502 FNSYS 516
           F   S
Sbjct: 486 FRPTS 490


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = +1

Query: 241 KSKDTGLKKALDSSDANGIVTMENELNLMHLSSPKTTSPLAAYLNQSQDIGHTQKPALMP 420
           KSK+   KK   SS      T EN    + L +P T++P    L++ +    T    + P
Sbjct: 217 KSKEKATKKT--SSSVPKQSTGENTKKAVKLETPLTSTPPIPPLSEPKHSPATVNEHISP 274

Query: 421 PTMFTASSGGDVQPS 465
           P+  T  S  +++PS
Sbjct: 275 PSALTNPSTEELKPS 289


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 406  PALMPPTMFTASSGGDVQPSPQPLTRNQLLQAFNSYSNMMQIL*INSTKPMSNRFQK 576
            P   PP   TA SG    P+P PLT  +     +S  N    +  N+  P ++  +K
Sbjct: 1905 PPAGPPAGATAISGNPGMPAPVPLTGKETAVPLSSMPNAPPSVASNAKLPPASNNRK 1961


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 406  PALMPPTMFTASSGGDVQPSPQPLTRNQLLQAFNSYSNMMQIL*INSTKPMSNR 567
            P   PP    ASS   V   P P  R+ LLQ  ++ + + + +  + +KP++ R
Sbjct: 1727 PPSAPPPPLPASSAPSV---PNPGDRSALLQQIHTGTRLKKTVTTDKSKPIAGR 1777


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 38  PRATDSREVPQL--LQRLMSNPAHSVEHIEKQQRSVTPQEGQSSNGNSTLDSGIK 196
           P +++S   PQL  L+  +S+P  S   I++   +      Q  N  STL S  K
Sbjct: 128 PPSSNSSSSPQLQNLKHQLSSPQPSRAPIDRSSSNPVTSSQQPPNDRSTLSSSQK 182


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 470 SHSPGINSFRPLIL 511
           +HSPG NSF PLI+
Sbjct: 934 THSPGNNSFWPLII 947


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 146 QEGQSSNGNSTLDSGIKPNCMFSLKSTPLEKQNQRIQD*RKL*IVVMLME 295
           QE +    NS +DSG+K   + + K   L  ++++I+  RK  +   LME
Sbjct: 565 QENKFEKNNSFMDSGLK-GFLHNEKIFVLGNKDEQIRQYRKTMVADKLME 613


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 104 SVEHIEKQQRSVTPQEGQSSNGNSTLDSGIKPN 202
           S  HI + +  +  +E    NGN + + G++PN
Sbjct: 79  SNSHISRNENELFSKENSIYNGNFSENLGVQPN 111


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +2

Query: 8   SSLPSPGIFGPRATDSREVPQLLQRLMSNPAHSVEHIEKQQRSVTPQEGQSSNGN-STLD 184
           SS  +PG+   + T  +   +    L SN +  V+H+    ++ + +   S N N S++ 
Sbjct: 175 SSSQNPGLVCEQKTFYQHQFRPFSNLPSNKSSPVKHVSPNVKNNSKKTASSVNSNHSSIP 234

Query: 185 SGIKPNCMFSLKSTPLEK 238
           S I  + + SL     EK
Sbjct: 235 SSITKSNISSLDVYGSEK 252


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +2

Query: 89  SNPAHSVEHIEKQQRSVTPQEGQSSNGNSTLDSGIKPNCMFSLKSTPLEKQNQ 247
           S+   S + +   Q SV+   G +S    +LD  ++ N  FS+ + P+E++ +
Sbjct: 141 SSDFQSKDSLSTTQPSVSGGNGSTSQSPPSLD--VEQNKPFSISNEPVEQETE 191


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 504 KGLKELIPGEWLR*WLD 454
           KGLKE +P EWL   LD
Sbjct: 118 KGLKEFLPEEWLLSRLD 134


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 80  RLMSNPAHSVEHIEKQQRSVTPQEGQSSN 166
           +L S P H + H++K++ S T +   S +
Sbjct: 50  KLSSGPQHLLSHLQKEENSNTSKASSSED 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,434,991
Number of Sequences: 5004
Number of extensions: 72634
Number of successful extensions: 230
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)