Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40595
(809 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0146 + 5916692-5917931,5918198-5918261,5918836-5919057,591... 31 1.4
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 30 1.9
03_06_0341 - 33261210-33261327,33261411-33262057,33262950-332630... 30 2.5
04_04_1322 + 32640414-32642327 29 3.3
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572... 29 5.8
07_01_0616 + 4560866-4560952,4561144-4561208,4564481-4564913,456... 28 7.6
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 28 7.6
>03_02_0146 +
5916692-5917931,5918198-5918261,5918836-5919057,
5919626-5919747,5920105-5920170,5920192-5920386,
5920480-5921057,5921818-5921968,5922465-5922715
Length = 962
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +2
Query: 11 SLPSPGIFGPRATDSREVPQLLQRLMSNPAHSVEHIEKQQRS-VTPQ-EGQSSNGNSTLD 184
SL +P + R T V R+ N + +++ S ++P G++ NG+S
Sbjct: 78 SLVTPTVVNQRPTPP--VSPAASRISPNRPGTAKNVHSVVTSCISPNLTGKAENGHSLAT 135
Query: 185 SGIKPNCMFSLK 220
SGI PNC ++K
Sbjct: 136 SGISPNCPGAVK 147
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Frame = +2
Query: 14 LPSPGIFGPRATDSREVPQLLQRLMSNPAHSVEHIEKQQRSVTPQ---EGQSSNGNSTLD 184
+P P GPR + R VP R + H H++ Q V+P G SS + +
Sbjct: 215 MPQPYYGGPRGSGGRSVPSGSSRTVPE-LHQAPHVQYQAPMVSPTPSGAGSSSQPAAEVS 273
Query: 185 SGIKPNCMFSLKSTPLEKQNQRIQ 256
SG L + +Q IQ
Sbjct: 274 SGQVQQQFQQLATRDQSSTSQAIQ 297
>03_06_0341 -
33261210-33261327,33261411-33262057,33262950-33263061,
33263313-33264097,33264797-33264867,33266323-33266635
Length = 681
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 394 HTQKPALMPPTMFTASSGGDVQPSPQPLTRNQL 492
H Q P+ +F +S GG P P+PL QL
Sbjct: 42 HLQTPSTWDAFLFPSSGGGSAAPPPRPLLLLQL 74
>04_04_1322 + 32640414-32642327
Length = 637
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/56 (37%), Positives = 23/56 (41%)
Frame = -3
Query: 180 SVELPFELCPS*GVTDRCCFSICSTECAGLLMSLCKSCGTSLESVARGPNIPGEGN 13
S E F LC S G RC + CS G M CKS G + G EGN
Sbjct: 344 SAEGQFGLCISHGGGRRCQYPNCSKGAQGGTM-FCKSHGGGKRCIFEGCTKGAEGN 398
>04_04_0201 -
23555336-23556008,23556097-23556258,23556353-23557206,
23557452-23557613,23558197-23558649,23559729-23559788,
23559983-23560058,23561546-23561593,23561948-23562022,
23562067-23562494
Length = 996
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +1
Query: 325 MHLSSPKTTSPLAAYLNQSQDIGHTQKPAL--MPP 423
+HL P PLA N +GH PAL +PP
Sbjct: 873 LHLPPPPPRDPLAPMSNFPYSLGHAPSPALRGLPP 907
>07_01_0616 +
4560866-4560952,4561144-4561208,4564481-4564913,
4565634-4565786,4565875-4565946,4567602-4567712,
4568344-4568584,4568743-4568821,4568892-4569018
Length = 455
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 289 NGIVTMENELNLM-HLSSPKTTSPLAAYLNQSQDIGHTQKPALMPPTMFTASSGGDVQPS 465
+G+ ++ L L+ S +SP+ + + ++ HT P T S GD P
Sbjct: 112 DGVPADQDVLKLVDQQKSSLPSSPINHGIAEQEESNHTVPQPFAPATEREDSGEGDCTPV 171
Query: 466 PQPLTRNQLLQAFNSYS 516
P P + + L +S S
Sbjct: 172 PHPTSNGEKLSDKSSTS 188
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +1
Query: 280 SDANGIVTMENELNLMHLSSPKT-TSPLAAYLNQSQDIGHTQKPALMPPTMFTASSGGDV 456
S +G + ++ +L SP SP AA S +G + P +T SSGG
Sbjct: 1533 SPISGTPYHQGMMSPSYLLSPDIRASPTAADAQFSPYVGGMAFSPVSSPGNYTPSSGGGY 1592
Query: 457 QPSPQPLT 480
PSP T
Sbjct: 1593 SPSPPVCT 1600
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,818,850
Number of Sequences: 37544
Number of extensions: 455472
Number of successful extensions: 1234
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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