Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40595
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    23   3.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   4.4  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   5.8  

>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 142 CNRSLLLLNMFY*MCRVTHEPL*KLWY 62
           C   ++++ +FY    +TH  L   WY
Sbjct: 53  CGSHIIIVGLFYEFGLITHVKLSSDWY 79


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +1

Query: 454 VQPSPQPLT-RNQLLQAFN 507
           + P+PQPLT + +LLQ F+
Sbjct: 221 LNPNPQPLTGQQELLQDFS 239


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 321 IEFILHGDYSISITTI*SFLQS 256
           +EFI HG+ ++   ++ SFL++
Sbjct: 85  VEFIYHGEVNVHQRSLSSFLKT 106


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 250 DTGLKKALDSSDANGIVTMENE 315
           D+G+ +  +    NGI+ +ENE
Sbjct: 36  DSGIDEKKEDDFRNGIIDVENE 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,140
Number of Sequences: 438
Number of extensions: 4481
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)