Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40594
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.3  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   7.3  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   9.7  

>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 192 NIFYKVYVWKRSLLAIKTANCTVKYLMFR--IGFFLAYNK*YSL 67
           +IF+ VY  K++L  I T    +K+L+ R  + F L++   +SL
Sbjct: 72  SIFFFVYYCKQALEFISTVFSIIKFLLNRRKVSFLLSFLLLFSL 115


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +1

Query: 373 ATLTYNHSVFPLNLRSHPIAEIAGFRGYEENIGKSTWLLLYANMLS 510
           AT++ + +    +LR+  + ++   RG+E+++   TW  LY N+L+
Sbjct: 266 ATVSRDSTCRVFDLRA--MKDVRVLRGHEKDVNCVTWHPLYPNLLT 309


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 294 YFPVRGVSCHRAVGKNFIWRQSE 362
           Y P R VSCH ++     W  +E
Sbjct: 305 YIPYRTVSCHDSIVSTMHWASTE 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,783
Number of Sequences: 5004
Number of extensions: 64612
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)