Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40593
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 80 3e-16
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 77 3e-15
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 69 1e-12
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 66 4e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 64 3e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 60 3e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 58 2e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 57 3e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 56 6e-09
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 56 8e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 54 2e-08
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 54 2e-08
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 53 4e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 53 4e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 52 7e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 51 2e-07
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 49 7e-07
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 49 7e-07
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 48 1e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 47 4e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 43 4e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 1e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.027
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 29 0.77
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 1.0
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 27 2.4
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 27 4.1
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 27 4.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 4.1
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 26 7.2
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 7.2
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 25 9.5
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 25 9.5
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 9.5
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 80.2 bits (189), Expect = 3e-16
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +1
Query: 256 GLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNNG-LQVMI 432
G+ +GF++PSPIQ +P+ G D+L AK+GTGKT F I +LEK++ +Q +I
Sbjct: 58 GIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLI 117
Query: 433 LTPTREIAAQICDVIKQIGSH 495
L PTRE+A Q V K +G H
Sbjct: 118 LVPTRELALQTSQVCKTLGKH 138
Score = 66.9 bits (156), Expect = 3e-12
Identities = 35/95 (36%), Positives = 52/95 (54%)
Frame = +3
Query: 510 VEVVMGGLSVNEDIAKFKKKVHIVVGSPGRLKHLIVGNHINLSDVQLFVLDECDKLVEKP 689
V V GG ++ +DI + VHIVVG+PGR+ L + S+ FV+DE DKL+
Sbjct: 143 VMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPE 202
Query: 690 FLNDINYIFSALPNHKQVIMSSATFQNIARKSICK 794
F I + S P ++Q+ + SATF I + + K
Sbjct: 203 FTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDK 237
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 77.0 bits (181), Expect = 3e-15
Identities = 44/97 (45%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Frame = +3
Query: 516 VVMGGLSVNEDIAKFK---KKVHIVVGSPGRLKHLIVGNHINLSDVQLFVLDECDKLVEK 686
V GG+++ +D+ FK K HIVV +PGRL L+ + ++ V+ FVLDECDKL+E
Sbjct: 153 VFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLES 212
Query: 687 -PFLNDINYIFSALPNHKQVIMSSATFQNIARKSICK 794
DI +F A P KQV+M SAT N R ICK
Sbjct: 213 VDMRRDIQEVFRATPPQKQVMMFSATLSNEIR-PICK 248
Score = 57.6 bits (133), Expect = 2e-09
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +1
Query: 253 RGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNNG-LQVM 429
R + SGF+ PS +Q +P G D+L +AKSG GKT VF + L+++ +G + V+
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVL 123
Query: 430 ILTPTREIAAQI 465
+L TRE+A QI
Sbjct: 124 VLCHTRELAFQI 135
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 68.5 bits (160), Expect = 1e-12
Identities = 35/92 (38%), Positives = 53/92 (57%)
Frame = +3
Query: 522 MGGLSVNEDIAKFKKKVHIVVGSPGRLKHLIVGNHINLSDVQLFVLDECDKLVEKPFLND 701
+GG V +D+A + VH+VVG+PGR+ +I + VQ+FVLDE D+++ + F +
Sbjct: 122 IGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQ 181
Query: 702 INYIFSALPNHKQVIMSSATFQNIARKSICKF 797
I IF LP QV++ SAT + KF
Sbjct: 182 IYDIFQLLPPTAQVVLLSATMPQDVLEVTTKF 213
Score = 63.3 bits (147), Expect = 4e-11
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +1
Query: 253 RGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLN-NGLQVM 429
RG+ + GF++PS IQ + D+L +A+SGTGKT FSI L+K++ + Q +
Sbjct: 32 RGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQAL 91
Query: 430 ILTPTREIAAQICDVIKQIG 489
IL PTRE+A QI V+ +G
Sbjct: 92 ILAPTRELAQQIQKVVVALG 111
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 66.5 bits (155), Expect = 4e-12
Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +1
Query: 253 RGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLN-NGLQVM 429
RG+ + G++ PS +Q + G D++ +A+SGTGKT FSI L+ ++L+ Q +
Sbjct: 34 RGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQAL 93
Query: 430 ILTPTREIAAQICDVIKQIGSH 495
IL+PTRE+A QI +V+ +G H
Sbjct: 94 ILSPTRELAVQIQNVVLALGDH 115
Score = 60.9 bits (141), Expect = 2e-10
Identities = 32/92 (34%), Positives = 50/92 (54%)
Frame = +3
Query: 522 MGGLSVNEDIAKFKKKVHIVVGSPGRLKHLIVGNHINLSDVQLFVLDECDKLVEKPFLND 701
+GG SV DI K H+V G+PGR+ +I ++ +V++ +LDE D+L+ + F
Sbjct: 124 IGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQ 183
Query: 702 INYIFSALPNHKQVIMSSATFQNIARKSICKF 797
I I+ LP QV++ SAT + KF
Sbjct: 184 IYDIYRYLPPGTQVVVVSATLPQDVLEMTNKF 215
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 63.7 bits (148), Expect = 3e-11
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Frame = +3
Query: 498 QGSDVE--VVMGGLSVNEDIAKFKKKVHIVVGSPGRLKHLIVGNHINLSDVQLFVLDECD 671
+G+D+ ++GG+S+ E + K IVV +PGR HL V + LS ++ V DE D
Sbjct: 164 KGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEAD 223
Query: 672 KLVEKPFLNDINYIFSALPNHKQVIMSSAT 761
+L E F + I ALP +Q ++ SAT
Sbjct: 224 RLFEMGFAAQLTEILHALPTSRQTLLFSAT 253
Score = 56.0 bits (129), Expect = 6e-09
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +1
Query: 253 RGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLN---LNNGLQ 423
R + GF+ P+PIQ +PL G D++ A++G+GKT F I +E L N+ +
Sbjct: 82 RAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTR 141
Query: 424 VMILTPTREIAAQICDVIK 480
+IL+P RE+A Q V+K
Sbjct: 142 ALILSPNRELALQTVKVVK 160
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 60.5 bits (140), Expect = 3e-10
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Frame = +1
Query: 217 YVHFHASFRIYTRGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 396
+ HF S + L +GF KP PIQ +P GFD++ +A +G+GKT+ F I LE
Sbjct: 124 WAHFSLSPEMLG-SLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILE 182
Query: 397 KLNLN---NGLQVMILTPTREIAAQIC 468
N +Q +++ PTRE+A QIC
Sbjct: 183 HCLRNVDAKYVQALVVAPTRELAHQIC 209
Score = 52.0 bits (119), Expect = 1e-07
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Frame = +3
Query: 519 VMGGLSVNEDIAKFKKKVHIVVGSPGRLKHLIVGNHI--NLSDVQLFVLDECDKLVEKPF 692
+ GGL+V + K H+VV +PGRL +I N++ N ++ VLDE D+L++K
Sbjct: 226 ITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSH 285
Query: 693 LNDINYIFSALPN----HKQVIMSSATF 764
+++ + L N +Q + SATF
Sbjct: 286 FEELSKLLEILGNPMHTQRQTFIFSATF 313
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 57.6 bits (133), Expect = 2e-09
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Frame = +1
Query: 265 SSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNN----GLQVMI 432
+ GF+K +P+Q + +PL DL++EA +G+GKT+ + + +K+ + GL +I
Sbjct: 18 AQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALI 77
Query: 433 LTPTREIAAQICDVIKQI 486
+ PTRE+A QI +V K++
Sbjct: 78 VAPTRELATQIFNVTKEL 95
Score = 54.4 bits (125), Expect = 2e-08
Identities = 27/88 (30%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Frame = +3
Query: 513 EVVMGGL-SVNEDIAKFKKK-VHIVVGSPGRLKHLIVGNHINLSDVQLFVLDECDKLVEK 686
++ +GG ++ D+A F++K +V+G+PGRL ++ +HI+ +++ +LDE D L++
Sbjct: 112 DMYIGGKGTLTNDLASFREKNPSVVIGTPGRLNEML--SHISSKHLEILILDEADTLIDM 169
Query: 687 PFLNDINYIFSALPNHKQVIMSSATFQN 770
F + I S LP ++ + SAT +
Sbjct: 170 GFQRTLQSIISQLPKQRRTGLFSATMND 197
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 56.8 bits (131), Expect = 3e-09
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +3
Query: 522 MGGLSVNEDIAKFKKKVHIVVGSPGR-LKHLIVGNHINLSDVQLFVLDECDKLVEKPFLN 698
+GGLS+ + +K+ IV+ +PGR + H+ + ++++ V+DE D+++E F +
Sbjct: 365 IGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFAD 424
Query: 699 DINYIFSALPNHKQVIMSSAT 761
++N I A P +Q ++ SAT
Sbjct: 425 ELNEIIQACPKSRQTMLFSAT 445
Score = 52.0 bits (119), Expect = 1e-07
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +1
Query: 253 RGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLN----NGL 420
+GL + GF+ P+ IQ +PL G D++ A +G+GKT F + LE+L
Sbjct: 272 KGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTT 331
Query: 421 QVMILTPTREIAAQICDVIKQIGS 492
+V+IL PTRE+A Q V +I S
Sbjct: 332 RVLILCPTRELAMQCHSVATKIAS 355
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 56.0 bits (129), Expect = 6e-09
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Frame = +1
Query: 271 GFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE-----KLNLNNGLQVMIL 435
GF+ + IQ +P G D+L AK+G+GKT+ F I +E K NG V+I+
Sbjct: 108 GFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIII 167
Query: 436 TPTREIAAQICDVIKQIGSHH 498
+PTRE+A QI V K++ +H
Sbjct: 168 SPTRELALQIFGVAKELLKYH 188
Score = 46.0 bits (104), Expect = 6e-06
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Frame = +3
Query: 516 VVMGGLSVNEDIAKFKKKVHIVVGSPGR-LKHLIVGNHINLSDVQLFVLDECDKLVEKPF 692
+V+GG + + K K V+++V +PGR L HL +++ V+DE D+++E F
Sbjct: 194 IVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGF 253
Query: 693 LNDINYIFSALPN-HKQVIMSSAT 761
+++ I LP+ ++Q ++ SAT
Sbjct: 254 EDEMRQIMKILPSENRQTLLFSAT 277
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 55.6 bits (128), Expect = 8e-09
Identities = 30/84 (35%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Frame = +1
Query: 253 RGLISSGFQKPSPIQLHGVPL--GKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNNGL-Q 423
+G+ S FQKPS IQ +PL +++ +++SGTGKT F++ L +++ + Q
Sbjct: 127 KGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQ 186
Query: 424 VMILTPTREIAAQICDVIKQIGSH 495
+ L P+RE+A QI DV+ ++G +
Sbjct: 187 AICLAPSRELARQIMDVVTEMGKY 210
Score = 52.4 bits (120), Expect = 7e-08
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Frame = +3
Query: 489 ITPQGSDVEVVMGGLSVNEDIAKFKK-KVHIVVGSPGRLKHLIVGNHINLSDVQLFVLDE 665
+T G EV + + + K K IV+G+PG + L+ ++ D+++FVLDE
Sbjct: 204 VTEMGKYTEVKTA-FGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDE 262
Query: 666 CDKLVEKPFLNDINY-IFSALPNHKQVIMSSATFQNIARKSICKF 797
D ++++ L D + I LP + Q+++ SATF K +F
Sbjct: 263 ADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERF 307
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 54.4 bits (125), Expect = 2e-08
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Frame = +1
Query: 202 NSGKCYVHFHASFRIYTRGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFS 381
+S K + F+ R+ R + F+KP+ +Q +PL G DL+ +A++G+GKT +
Sbjct: 11 SSEKTFSDFNLDPRLQ-RAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYL 69
Query: 382 IIALEKL-------NLNNGLQVMILTPTREIAAQICDVIKQI 486
I LE L G+ ++L PTRE+A Q+ +V++++
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKL 111
Score = 35.5 bits (78), Expect = 0.009
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 576 IVVGSPGRLKHLIVGNHINLSDVQLFVLDECDKLVEKPFLNDINYIFSALPNHKQVIMSS 755
IV+ +P R + + L ++ V+DE D ++ + D+ + +LP Q + S
Sbjct: 143 IVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMS 202
Query: 756 ATF-QNIA--RKSICK 794
AT +NIA +K +C+
Sbjct: 203 ATLSKNIASLQKLVCR 218
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 54.0 bits (124), Expect = 2e-08
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Frame = +3
Query: 498 QGSDVE--VVMGGLSVNEDIAKFKKKVHIVVGSPGRLKHLIVGNHINLSDVQLFVLDECD 671
QG++++ VV GG +E A+ K +++G+PGRL LI I+ S V VLDE D
Sbjct: 261 QGTNLKAVVVYGGAPKSEQ-ARAAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEAD 319
Query: 672 KLVEKPFLNDINYIFSALPN-----HKQVIMSSATFQNIARKSICKF 797
++++ F DI I S P+ +Q + SAT+ R F
Sbjct: 320 RMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATF 366
Score = 46.4 bits (105), Expect = 5e-06
Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 4/67 (5%)
Frame = +1
Query: 274 FQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLN-LNNGL---QVMILTP 441
+++P+PIQ P G D++ A++G+GKTV F I AL+ LN L++ +V++++P
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 442 TREIAAQ 462
TRE+A Q
Sbjct: 245 TRELAIQ 251
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 53.2 bits (122), Expect = 4e-08
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Frame = +3
Query: 516 VVMGGLSVNEDIAKFKKKVHIVVGSPGRLKHLIVGNH----INLSDVQLFVLDECDKLVE 683
+++GG+ + K+ H+VV +PGRL LI N L ++ V+DE D+L+
Sbjct: 108 LIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLS 167
Query: 684 KPFLNDINYIFSALP--NHKQVIMSSATFQNIARK 782
F +D++ FS LP +Q ++ +AT + R+
Sbjct: 168 PTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQ 202
Score = 44.0 bits (99), Expect = 3e-05
Identities = 21/51 (41%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +1
Query: 346 AKSGTGKTVVFSIIALEKLNLN-NGLQVMILTPTREIAAQICDVIKQIGSH 495
AK+G+GKT F++ +EK + + +G+ +ILTPTRE+A QI + +G++
Sbjct: 51 AKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGAN 101
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 53.2 bits (122), Expect = 4e-08
Identities = 26/83 (31%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +3
Query: 516 VVMGGLSVNEDIAKFKKKVHIVVGSPGRL-KHLIVGNHINLSDVQLFVLDECDKLVEKPF 692
+++GG + E+ + + ++I+V +PGRL +H+ + + S +Q+ +LDE D++++ F
Sbjct: 144 LIIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGF 202
Query: 693 LNDINYIFSALPNHKQVIMSSAT 761
++ I S+LP H+Q ++ SAT
Sbjct: 203 RTTLDAIVSSLPVHRQTMLFSAT 225
Score = 46.4 bits (105), Expect = 5e-06
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +1
Query: 292 IQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLN-----NGLQVMILTPTREIA 456
IQ +P G D+L AK+G+GKT+ F + +E L +GL ++++PTRE+A
Sbjct: 65 IQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELA 124
Query: 457 AQICDVIKQIGSHH 498
Q + + +IG H
Sbjct: 125 IQTFETLVKIGRLH 138
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 52.4 bits (120), Expect = 7e-08
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +3
Query: 516 VVMGGLSVNEDIAKFKKKVHIVVGSPGRLK-HLIVGNHINLSDVQLFVLDECDKLVEKPF 692
V++GG+ + KK H++V +PGRL HL +L +++ ++DE D+L++ F
Sbjct: 147 VIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDF 206
Query: 693 LNDINYIFSALPNHKQVIMSSATFQNIARK 782
I+ I +P+ ++ ++ SAT + K
Sbjct: 207 GPIIDKILKIIPHERRTLLFSATMTSKVEK 236
Score = 50.8 bits (116), Expect = 2e-07
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +1
Query: 271 GFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKL-NLNNGLQVMILTPTR 447
GF+ P+PIQ +P+ D++ A++G+GKT F++ +++L N + ++L PTR
Sbjct: 65 GFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTR 124
Query: 448 EIAAQICDVIKQIG 489
E+A QI + + IG
Sbjct: 125 ELAYQISEQFEAIG 138
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 51.2 bits (117), Expect = 2e-07
Identities = 27/79 (34%), Positives = 42/79 (53%)
Frame = +3
Query: 495 PQGSDVEVVMGGLSVNEDIAKFKKKVHIVVGSPGRLKHLIVGNHINLSDVQLFVLDECDK 674
P G V+GG + E + + HIVV +PGRL + LS V+DE D+
Sbjct: 351 PLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADR 410
Query: 675 LVEKPFLNDINYIFSALPN 731
+++ F +D+N I S+LP+
Sbjct: 411 MLDMGFEDDVNKILSSLPS 429
Score = 41.9 bits (94), Expect = 1e-04
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Frame = +1
Query: 274 FQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVF---SIIALEKL------NLNNGLQV 426
+++PS IQ +P+ DL+ A++G+GKT F IIA+ KL N++ G
Sbjct: 269 YKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYA 328
Query: 427 MILTPTREIAAQI 465
++L PTRE+A QI
Sbjct: 329 VVLAPTRELAQQI 341
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 49.2 bits (112), Expect = 7e-07
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Frame = +3
Query: 519 VMGGLSVNEDIAKFKKKVHIVVGSPGRL-KHLIVGNHINLSDVQLFVLDECDKLVEKPFL 695
V+GG + A+ +K V+I++G+PGRL HL +++S V+ VLDE D+L++ F
Sbjct: 253 VIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFE 312
Query: 696 NDINYIFSALPNHKQVIMSSATFQNIARKSIC 791
+ I S L + +I + + +C
Sbjct: 313 ETLTKILSYLESQSSIIKKDLSIPSRKVTMLC 344
Score = 36.7 bits (81), Expect = 0.004
Identities = 19/63 (30%), Positives = 40/63 (63%), Gaps = 8/63 (12%)
Frame = +1
Query: 331 DLLLEAKSGTGKTVVFSIIALEKL-----NLN---NGLQVMILTPTREIAAQICDVIKQI 486
D +EA++G+GKT+ + + +++L NL+ +G+ +I+ PTRE+ QI +V ++
Sbjct: 180 DAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKL 239
Query: 487 GSH 495
++
Sbjct: 240 NNN 242
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 49.2 bits (112), Expect = 7e-07
Identities = 27/82 (32%), Positives = 41/82 (50%)
Frame = +3
Query: 519 VMGGLSVNEDIAKFKKKVHIVVGSPGRLKHLIVGNHINLSDVQLFVLDECDKLVEKPFLN 698
V GG+ I + V I + +PGRL ++ N NL V VLDE D++++ F
Sbjct: 229 VYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEP 288
Query: 699 DINYIFSALPNHKQVIMSSATF 764
I I + +Q +M SAT+
Sbjct: 289 QIRKIVDQIRPDRQTVMFSATW 310
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Frame = +1
Query: 271 GFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNL------NNGLQVMI 432
GF+ P+PIQ P+ G D++ + +G+GKT+ + + A+ +N +G V++
Sbjct: 141 GFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLV 200
Query: 433 LTPTREIAAQI 465
L PTRE+A QI
Sbjct: 201 LAPTRELAVQI 211
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 48.4 bits (110), Expect = 1e-06
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Frame = +1
Query: 265 SSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVF------SIIALEKLNLNNGLQV 426
S G++KP+ IQ +P G D++ AK+G+GKT+ F I L G
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIA 494
Query: 427 MILTPTREIAAQI 465
+I+TPTRE+A QI
Sbjct: 495 IIMTPTRELAVQI 507
Score = 45.6 bits (103), Expect = 8e-06
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Frame = +3
Query: 525 GGLSVNEDIAKFKKKVHIVVGSPGRLKHLI---VGNHINLSDVQLFVLDECDKLVEKPFL 695
GG + + IA K+ IVV +PGR+ ++ G NL VLDE D++ + F
Sbjct: 527 GGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFE 586
Query: 696 NDINYIFSALPNHKQVIMSSATF----QNIARKSICK 794
+ I + + +Q ++ SATF + +ARK + K
Sbjct: 587 PQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKK 623
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 46.8 bits (106), Expect = 4e-06
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +3
Query: 519 VMGGLSVNEDIAKFKKKVHIVVGSPGRLKHLIVGNHINLSDVQLFVLDECDKLVEKPFLN 698
V GG + I + + ++ +PGRL LI I+L++++ VLDE D++++ F
Sbjct: 289 VYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEP 348
Query: 699 DINYIFSALP----NHKQVIMSSATF 764
I +I +Q +M SATF
Sbjct: 349 QIRHIVEGADMTSVEERQTLMFSATF 374
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/44 (38%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Frame = +1
Query: 268 SGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTV--VFSIIAL 393
SG+ +P+P+Q + +P+ G DL+ A++G+GKT +F I++L
Sbjct: 187 SGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL 230
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 43.2 bits (97), Expect = 4e-05
Identities = 27/87 (31%), Positives = 52/87 (59%), Gaps = 7/87 (8%)
Frame = +1
Query: 247 YTRGLISSGFQKPSPIQLHGV-PLGKCGFDLLLEAKSGTGKTVVFSIIALE-----KLNL 408
+ L +GF+K +P+Q + + + +++AK+GTGKT+ F ++A + K L
Sbjct: 49 FKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRL 108
Query: 409 NNG-LQVMILTPTREIAAQICDVIKQI 486
N+ + +IL+PTRE+A QI + +++
Sbjct: 109 NSSKIHSVILSPTRELALQIFEEARKL 135
Score = 35.5 bits (78), Expect = 0.009
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +3
Query: 501 GSDVEVVMGGLS-VNEDIAKFKKKVHIVVGSPGRLK-HLIVGNHINLSDVQLFVLDECDK 674
G V +GG S + E+ A + ++++ +PGRL+ HL + F+LDE D+
Sbjct: 140 GIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADR 199
Query: 675 LVEKPFLNDINYIFSALPNHK 737
L++ F I I A+ K
Sbjct: 200 LMDMGFAESILNIHEAVTTTK 220
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +3
Query: 510 VEVVMGGLSVNEDIAKFKKKVHIVVGSPGRLKHLIVGNHINLSDVQLFVLDECDKLVEKP 689
+E+ + E K ++K + +G+P RL I ++ V+ FV+DE D+L E
Sbjct: 147 IELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTG-LSFEKVEFFVMDEADRLFEPG 205
Query: 690 FLNDINYIFSA 722
F+ ++I SA
Sbjct: 206 FIEQTDHILSA 216
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +1
Query: 292 IQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLN--NGLQVMILTPTREIAAQI 465
IQ + +P DLL A +G+GKT+ + L+KL L+ G + +I+ PTRE+ QI
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.027
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +1
Query: 250 TRGLISSGFQKPSPIQ--LHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNN--G 417
TRG P +Q HG P+ G D+ + A +G+GKT+ + I ++ L+
Sbjct: 147 TRGFAVQAAVLPLLLQDGRHG-PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPR 205
Query: 418 LQVMILTPTREIAAQI 465
L+ +++ PTRE+ Q+
Sbjct: 206 LRCVVIVPTRELTVQV 221
Score = 32.7 bits (71), Expect = 0.063
Identities = 14/58 (24%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +3
Query: 567 KVHIVVGSPGRL-KHLIVGNHINLSDVQLFVLDECDKLVEKPFLNDINYIFSALPNHK 737
++ ++V +PGRL H+ +L ++ V+DE D+L+++ F + ++ + + + K
Sbjct: 260 RIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPK 317
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 276 PKTISNSTSWCPTRQMWFRFVTRSKVWNWKNCCVFYNSIRKTKS 407
P T +SW P +Q + K+WN + CV +++I +S
Sbjct: 87 PPTFFLKSSWLPLKQKRVLTSSLIKLWNEIHDCVLFDAIEHVRS 130
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +1
Query: 325 GFDLLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREIA 456
GF +++ + +GK++++ I L+ L +N + PT+ +A
Sbjct: 326 GFHVIVSTSTSSGKSLIYQIPILQSLLEDNQSTAFFVFPTKSLA 369
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +1
Query: 337 LLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREIAAQICDVIKQI 486
+L+AK G+T+V I + E++ LN G VM L R ++A C + ++
Sbjct: 28 ILQAKQ-LGETLVIGIHSDEEITLNKGPPVMTL-EERCLSANTCKWVDEV 75
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 319 KCGFDLLLEAKSGTGKTVVFSII 387
+CG ++L SGTGKT F+ +
Sbjct: 28 ECGLTIMLCGASGTGKTTFFNTL 50
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 331 DLLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREIAAQ 462
+LLL +G GKT + +++ L +++ L PT+ + Q
Sbjct: 126 NLLLALPTGLGKTFIAAVVMLNYFRWFPESKIIFLAPTKPLLLQ 169
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 334 LLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTP 441
++L K+G+GK+ +F I+ LN+ V +++P
Sbjct: 2170 IILLGKTGSGKSQIFRILQSALLNIGIDCIVYVISP 2205
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 155 SLAHDIRNSTRTRDVQIVENVTFTSMLLSEFTL 253
S DIRNST TR +++ T+ ++ E+ L
Sbjct: 378 SAVEDIRNSTATRIIEMTSKSTYMNIADFEWLL 410
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 377 NTTVFPVPDFASSNKSKPHLPS 312
NT +P F+S+ K KPHL S
Sbjct: 240 NTQEVVLPSFSSNAKPKPHLSS 261
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +3
Query: 495 PQGSDVEVVMGGLSVNEDIAKFKKKVHIV----VGSPGRLKHLIVGNHINLSDVQLFVL 659
P D+E+V+ G + EDI +K + +V +G PG + L + +N + QL ++
Sbjct: 237 PTVKDLEIVLEGEWIGEDICGMEKYMLMVLQYQLGWPGPVSFLRLLTIVNKWESQLRIM 295
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 316 GKCGFDLLLEAKSGTGKTV 372
GKCG+ +L + G GKT+
Sbjct: 225 GKCGYSAILADEMGLGKTL 243
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 633 LSDVQLFVLDECDKLVEKPFLNDINYIFSALPNHKQVIMSSA 758
LSDV ++ E + ++ P+ N F L K V+ SSA
Sbjct: 208 LSDVNRMIVTEQARFIKNPYDNMAKKRFEILLQLKNVLSSSA 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,221,634
Number of Sequences: 5004
Number of extensions: 66741
Number of successful extensions: 237
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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