Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40593
         (797 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    50   8e-08
AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.           26   1.6  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   4.7  
AJ438610-5|CAD27477.1|  135|Anopheles gambiae hypothetical prote...    24   6.3  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 50.0 bits (114), Expect = 8e-08
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
 Frame = +3

Query: 516 VVMGGLSVNEDIAKFKKKVHIVVGSPGRLKHLIVGNHINLSDVQLFVLDECDKLVEKPFL 695
           V  GG +V   +   +   H++V +PGRL   I   ++   +V   VLDE D++++  FL
Sbjct: 282 VSYGGTAVQHQLQLMRGGCHVLVATPGRLLDFIDRGYVTFENVNFVVLDEADRMLDMGFL 341

Query: 696 NDINYIF--SALP--NHKQVIMSSATF 764
             I  +   + +P    +Q +M SATF
Sbjct: 342 PSIEKVMGHATMPEKQQRQTLMFSATF 368



 Score = 46.4 bits (105), Expect = 1e-06
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
 Frame = +1

Query: 268 SGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK-LNLNNGLQ------- 423
           S + KP+PIQ + +P+   G DL+  A++G+GKT  F +  +   L+  + L+       
Sbjct: 192 SSYTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPMIHHLLDKEDSLELRTRNPY 251

Query: 424 VMILTPTREIAAQICD 471
           ++I+ PTRE+A QI D
Sbjct: 252 IVIVAPTRELAIQIHD 267


>AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 595 PGLPTTMCTFFLNLAMSSFTDNPPITTSTSD 503
           P  PTT  T +++   ++ T  PP TT+ SD
Sbjct: 212 PPPPTTTTTVWIDPTATTTTHVPPTTTTWSD 242


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 585 GSPGRLKHLIVGNHINLSDVQLFVLDECDK 674
           GS   L   I    + + D+ L ++DEC K
Sbjct: 128 GSETTLLQYIEQGTVRVQDISLLIVDECHK 157


>AJ438610-5|CAD27477.1|  135|Anopheles gambiae hypothetical protein
           protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +1

Query: 22  PTISFKLNRKLFQEKSQRTLGNHPIFQNRINHFLKTAGYLNCR 150
           P + F+ NR+L   + +R +   P    R+      +GY++ R
Sbjct: 32  PPVGFRYNRRLRTARLRRYIFQSPPRAVRVRQLAGCSGYVSPR 74


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 802,381
Number of Sequences: 2352
Number of extensions: 16688
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83992206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)