Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40593
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       54   2e-09
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   1.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 54.0 bits (124), Expect = 2e-09
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
 Frame = +3

Query: 516 VVMGGLSVNEDIAKFKKKVHIVVGSPGRLKHLIVGNHINLSDVQLFVLDECDKLVEKPFL 695
           V  GG SV     K     HI+V +PGRL   +    +  S VQ  VLDE D++++  FL
Sbjct: 306 VAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFL 365

Query: 696 NDINYIF---SALP-NHKQVIMSSATF----QNIARK 782
             I  +    + +P   +Q +M SATF    Q++AR+
Sbjct: 366 PSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLARR 402



 Score = 48.8 bits (111), Expect = 6e-08
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 11/77 (14%)
 Frame = +1

Query: 268 SGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLNNGL--------- 420
           SG++KP+P+Q H +P+   G DL+  A++G+GKT  F++  +  L L   +         
Sbjct: 214 SGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIINTL-LERSVDLVVTSTYC 272

Query: 421 --QVMILTPTREIAAQI 465
             QV+I++PTRE+  QI
Sbjct: 273 EPQVVIVSPTRELTIQI 289


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 321 MWFRFVTRSKVWNW 362
           M+F  VTR  VW W
Sbjct: 447 MFFNMVTRDSVWCW 460



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 615 VGNHINLSDVQLFVLDECDKL 677
           VGN   L+ V    +DECD+L
Sbjct: 239 VGNCDGLTSVFRIQVDECDRL 259


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/41 (21%), Positives = 20/41 (48%)
 Frame = -1

Query: 485 ICLITSHICAAISRVGVKIITCKPLLRFSFSNAIIENTTVF 363
           I  +   +C+   ++   ++T +P L  +F N +    TV+
Sbjct: 234 ITRVIPQVCSGNCKLNDILLTVRPHLELTFENILSHINTVY 274


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/41 (21%), Positives = 20/41 (48%)
 Frame = -1

Query: 485 ICLITSHICAAISRVGVKIITCKPLLRFSFSNAIIENTTVF 363
           I  +   +C+   ++   ++T +P L  +F N +    TV+
Sbjct: 234 ITRVIPQVCSGNCKLNDILLTVRPHLELTFENILSHINTVY 274


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 378 FYNSIRKTKS**WFASNDLDTYTRNSST 461
           F  S RKT    +F    L TY  N+ST
Sbjct: 272 FVGSCRKTDQILYFIRGCLQTYLINAST 299


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 378 FYNSIRKTKS**WFASNDLDTYTRNSST 461
           F  S RKT    +F    L TY  N+ST
Sbjct: 310 FVGSCRKTDQILYFIRGCLQTYLINAST 337


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 782 FPCNVLESGTTHNN 741
           + CNV+ SG +H N
Sbjct: 534 YACNVVGSGLSHGN 547


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 723 LPNHKQVIMSSATFQNIARKSI 788
           +P  ++ I S  TFQ++AR+S+
Sbjct: 668 IPEERR-IYSPITFQDVARRSV 688


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,771
Number of Sequences: 438
Number of extensions: 4131
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)