Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40592
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    31   0.19 
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    26   5.5  
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    26   5.5  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    26   7.2  
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    26   7.2  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.5  

>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +3

Query: 159 KTRSVDDRRSRK-KEQNKNAATRYRQKKK 242
           K + VDD + R+  E+N+ AA+++RQKKK
Sbjct: 4   KKKEVDDEKRRRILERNRIAASKFRQKKK 32


>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 129 DEDWSAPSRLKTRSVDDRRSRKKEQNKNAATRYRQKKK 242
           DE   A  + + +   +++ +KKEQ K   T  R+KKK
Sbjct: 129 DEALLAERKQRLKEQREKKEQKKEQKKEKKTERRKKKK 166


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 129 DEDWSAPSRLKTRSVDDRRSRKKEQNKNAATRYRQKKKAE 248
           DED     +++ R  DD +  +K++  +    Y Q+++ E
Sbjct: 254 DEDEDNKGKIRKRKTDDAKKSRKKRAPHIHIEYEQERENE 293


>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 208 KMLLLVTVRRKRPKWSAPQGG 270
           + +LLV+  +K P W  P+GG
Sbjct: 55  RKVLLVSSAKKHPSWVVPKGG 75


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 150 SRLKTRSVDDRRSRKK--EQNKNAATRYRQKKK 242
           SR  +++  D   RK   E+N+ AA + RQ+KK
Sbjct: 462 SRRNSKNETDEEKRKSFLERNRQAALKCRQRKK 494


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 174 DDRRSRKKEQNKNAATRYRQKKK 242
           D +R R  E+N+ AA++ RQKKK
Sbjct: 267 DMKRRRFLERNRIAASKCRQKKK 289


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 719  YKYTYFYNNECDLSSK*IN 663
            Y Y YF N +C++ SK +N
Sbjct: 1589 YAYPYFINFQCEMFSKVLN 1607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,144
Number of Sequences: 5004
Number of extensions: 51902
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)