Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40592
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0216 + 5864127-5864236,5864962-5865062,5865985-5866046,586... 29 3.3
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 29 3.3
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175... 29 5.7
02_04_0120 - 19932330-19932366,19932562-19932781,19932876-199329... 29 5.7
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90... 28 7.6
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 28 7.6
06_01_1077 - 8796951-8797097,8797185-8797442,8797541-8797812,879... 28 7.6
06_01_0031 - 305457-305663,306248-306523,306824-307609 28 7.6
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767... 28 7.6
01_01_0012 + 71903-72935,73468-73981,74619-76008 28 7.6
12_02_1071 + 25824311-25824460,25824774-25824857,25825168-258252... 28 10.0
06_03_0753 - 24177863-24178021,24178425-24178730,24181204-241814... 28 10.0
03_02_0816 + 11487811-11488708,11488835-11489235 28 10.0
>09_02_0216 +
5864127-5864236,5864962-5865062,5865985-5866046,
5866163-5866351,5866487-5866591,5866808-5866867,
5867636-5867713,5867881-5867938,5868286-5868554,
5872243-5872473,5872543-5872554
Length = 424
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 147 PSRLKTRSVDDRRSRKKEQNKNAATRYRQKKKAEVE 254
P R R++D + R+ QN+ AA + R +KKA ++
Sbjct: 178 PEREGRRTLDPKTLRRLAQNREAARKSRLRKKAYIQ 213
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 126 TDEDWSAPSRLKTRSVDDRRSRKKEQNKNAATRYRQKKKAEVEC 257
T E+W A S + + +++E+ + YRQ+K+ E C
Sbjct: 317 TGEEWKAMSEAEKAPFEAAARKQREEYQVEMAAYRQRKQEEAAC 360
>12_01_0234 +
1755704-1756120,1756203-1756313,1756923-1757063,
1757142-1757312,1757412-1757616,1757738-1757910,
1758021-1758103,1758250-1758389,1758569-1758645,
1758711-1758810,1759978-1760606
Length = 748
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 180 RRSRKKEQNKNAATRYRQKKKA 245
++SRK N+ A +YRQKKKA
Sbjct: 599 KKSRKPLGNREAVRKYRQKKKA 620
>02_04_0120 -
19932330-19932366,19932562-19932781,19932876-19932987,
19933071-19933226,19933307-19933471,19933723-19934160,
19934822-19935009,19935465-19935531,19936160-19936332,
19937176-19937308,19937399-19937546,19937622-19937815,
19938855-19939058,19939760-19939834
Length = 769
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 687 AFVIVKICILIGSTTSYSLFWLNHYFGIYIH 779
A++ +C L+G T+Y+ W++ Y+ Y H
Sbjct: 408 AWLNFALCGLVGIITAYAFVWISKYYTDYKH 438
>12_01_0119 +
905916-907277,907737-907774,908269-908492,909411-909637,
909733-909980,910275-910557,910707-911135
Length = 936
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 543 LSEQIRCHIIEQHKLRHHQRDTNNTL 620
L EQ+R I++ K +HH +D++N+L
Sbjct: 714 LDEQVRLLILDVAKEQHHYQDSHNSL 739
>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 543 LSEQIRCHIIEQHKLRHHQRDTNNTL 620
L EQ+R I++ K +HH +D++N+L
Sbjct: 1256 LDEQVRLLILDVAKEQHHYQDSHNSL 1281
>06_01_1077 -
8796951-8797097,8797185-8797442,8797541-8797812,
8797907-8797967,8798082-8798159,8798380-8798439,
8798543-8798629,8798717-8798941,8799003-8799091,
8799137-8799251
Length = 463
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 159 KTRSVDDRRSRKKEQNKNAATRYRQKKKAEVE 254
K R D + R+ QN+ AA + R +KKA ++
Sbjct: 165 KERRGDQKMQRRLAQNREAARKSRMRKKAYIQ 196
>06_01_0031 - 305457-305663,306248-306523,306824-307609
Length = 422
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 150 SRLKTRSVDDRRSRKKEQNKNAATRYRQK 236
S+LKT++ DD++ +KK+ N + ++K
Sbjct: 209 SKLKTKAKDDKKKKKKDNNTVVVNKEQKK 237
>04_03_0554 -
17075142-17075159,17075788-17076591,17076619-17076719,
17077095-17077751,17077827-17078768,17078837-17078896,
17079131-17079763,17079886-17079942,17080177-17080702
Length = 1265
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +3
Query: 129 DEDWSAPSRLKTRSV--DDRRSRKKEQNKNAATRYRQKKKAEVE 254
+++ +AP+R+K R++ D +++++++ N N A R K +E
Sbjct: 55 NQEKNAPTRMKYRNMGPDQKKAKREQVNANRALRRNTPSKYSIE 98
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 144 APSRLKTRSVDDRRSRKKEQNKNAATRYRQKKKAEVE 254
+P+R S RRSR + Q KN + + KK+E+E
Sbjct: 655 SPTRDHHSSRRSRRSRSRSQEKNRNSDKKDSKKSEME 691
>12_02_1071 +
25824311-25824460,25824774-25824857,25825168-25825246,
25825334-25825428,25825940-25826067,25826160-25826393,
25826509-25826683,25826716-25826748,25827292-25827375,
25827929-25828169,25828275-25828453,25828800-25828873,
25830800-25830950,25831178-25831252,25831748-25831778,
25832107-25832339
Length = 681
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 69 YWNVAEMPVERLGDGPVPRRRR 4
YWNV ER+ G VPRRRR
Sbjct: 638 YWNVITSDSERISGG-VPRRRR 658
>06_03_0753 -
24177863-24178021,24178425-24178730,24181204-24181475,
24181663-24181696,24181937-24182014,24182373-24182516,
24183064-24183122,24183593-24183723,24186655-24186743
Length = 423
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 141 SAPSRLK-TRSVDDRRSRKKEQNKNAATRYRQKKKAEVE 254
SA S LK ++ D + R+ QN+ AA + R +KKA ++
Sbjct: 107 SASSELKGPKTPDPKTLRRLAQNREAARKSRLRKKAYIQ 145
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 318 PPKRDSLPKGSDA*SFQGEGSNQVNQSTTPPPEK 419
PP ++ KGSD ++ +GS V+ S +P P+K
Sbjct: 206 PPTPEATGKGSDN-RWKDDGSRDVDPSPSPTPQK 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,187,060
Number of Sequences: 37544
Number of extensions: 337928
Number of successful extensions: 978
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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