Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40592
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    22   5.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   7.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.7  

>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 389 KSINNAASREIKQYAKTHKAIDSVDHRKLRE 481
           KS +   SRE K+  + +  + +V+ + LRE
Sbjct: 2   KSCSRDRSREYKKKDRRYDQLHNVEEKHLRE 32


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 159 KTRSVDDRRSRKKEQNKNAATRYRQKKK 242
           K  S    R +K  +N+N+  +YR+  K
Sbjct: 270 KRYSCSREREQKSYKNENSYRKYRETSK 297


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +2

Query: 689 IRYCKNMYTYRINN 730
           + +C+ MY  ++NN
Sbjct: 460 LHFCRQMYAMKVNN 473


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,161
Number of Sequences: 438
Number of extensions: 3942
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)