Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40590
         (678 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O06037 Cluster: EpsI; n=1; Lactococcus lactis subsp. cr...    35   2.1  
UniRef50_Q7RA24 Cluster: Patatin, putative; n=5; Plasmodium (Vin...    33   4.8  
UniRef50_Q98SD5 Cluster: Putative uncharacterized protein orf380...    33   6.4  

>UniRef50_O06037 Cluster: EpsI; n=1; Lactococcus lactis subsp.
           cremoris|Rep: EpsI - Lactococcus lactis subsp. cremoris
           (Streptococcus cremoris)
          Length = 396

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 367 YISILIIIFSFN--RHKFVYLVILSF-IYASRF*CVYNNGYW 483
           +I ILIII      R K +YL  +SF +Y+    C+ NN YW
Sbjct: 333 FILILIIILKLTNYRKKIIYLTFISFLVYSYTDNCIVNNRYW 374


>UniRef50_Q7RA24 Cluster: Patatin, putative; n=5; Plasmodium
           (Vinckeia)|Rep: Patatin, putative - Plasmodium yoelii
           yoelii
          Length = 997

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +1

Query: 319 NNNNIEDFF-YYFME*KYISILIIIFSFNRHKFVYLVILSFIY 444
           NN+N E+F  ++F++     ILII F  N   F+YL+I  FIY
Sbjct: 20  NNSNYENFSAHHFLKIPIFIILIIAFGLNA--FIYLLIRFFIY 60


>UniRef50_Q98SD5 Cluster: Putative uncharacterized protein orf380;
           n=1; Guillardia theta|Rep: Putative uncharacterized
           protein orf380 - Guillardia theta (Cryptomonas phi)
          Length = 380

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 10/38 (26%), Positives = 25/38 (65%)
 Frame = +1

Query: 238 GPNVIFS*FHQFLS*LRKVCG*FAYLNNNNNIEDFFYY 351
           G N+ +  FH +++ + K+   F +L +N+N++++ Y+
Sbjct: 55  GSNINYFKFHNYITLIEKIGSSFRFLKDNHNVDNYLYF 92


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 486,479,892
Number of Sequences: 1657284
Number of extensions: 8606566
Number of successful extensions: 14426
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14365
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)