Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40588
         (731 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1MRP8 Cluster: NA; n=1; Lawsonia intracellularis PHE/M...    35   2.4  
UniRef50_A0RNW6 Cluster: AfeC; n=1; Campylobacter fetus subsp. f...    33   5.5  
UniRef50_A2FY42 Cluster: Surface antigen BspA-like; n=1; Trichom...    33   5.5  
UniRef50_A2FM07 Cluster: Surface antigen BspA-like; n=1; Trichom...    33   5.5  

>UniRef50_Q1MRP8 Cluster: NA; n=1; Lawsonia intracellularis
           PHE/MN1-00|Rep: NA - Lawsonia intracellularis (strain
           PHE/MN1-00)
          Length = 318

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = -1

Query: 470 VQENNLSKKHVI*KKYCKNWILRGKMSRVVRLYT-RNKNYVL 348
           + E+NL+ KH+   KY ++WI  GKM+R+  +   +N +Y+L
Sbjct: 259 MHEHNLTAKHMDVSKYMQHWIGTGKMTRIKYVKAEKNASYLL 300


>UniRef50_A0RNW6 Cluster: AfeC; n=1; Campylobacter fetus subsp.
           fetus 82-40|Rep: AfeC - Campylobacter fetus subsp. fetus
           (strain 82-40)
          Length = 274

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 395 SYLLKSNSCSTFFISHVSYLNCFLVLKLYS 484
           SY++K++  S F  +   +L+CFL+LK YS
Sbjct: 11  SYIVKAHIVSLFLCAFCGFLSCFLILKSYS 40


>UniRef50_A2FY42 Cluster: Surface antigen BspA-like; n=1;
           Trichomonas vaginalis G3|Rep: Surface antigen BspA-like
           - Trichomonas vaginalis G3
          Length = 553

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +2

Query: 392 TSYLLKSNSCSTFFISHVSYLNCFLVLKLYSERKNATLGKNGFYKCSNF 538
           TS   KS    TF IS  S+ NC  + K+  +  N  + K  FY C NF
Sbjct: 278 TSVSFKSKEKLTFGIS--SFENCQKLAKIDLQNINIEINKQSFYNCQNF 324


>UniRef50_A2FM07 Cluster: Surface antigen BspA-like; n=1; Trichomonas
            vaginalis G3|Rep: Surface antigen BspA-like - Trichomonas
            vaginalis G3
          Length = 1707

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 425  TFFISHVSYLNCFLVLKLYSERKNATLGKNGFYKC 529
            +F I   ++ +CF +L  + + +  TLGKN FY C
Sbjct: 1135 SFAIGDNAFSSCFNLLTCHIQSETVTLGKNAFYNC 1169


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 627,205,606
Number of Sequences: 1657284
Number of extensions: 11081659
Number of successful extensions: 20058
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20055
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)