Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40588
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0250 - 22394024-22394148,22394379-22394940                       30   2.2  
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683...    29   5.0  

>03_05_0250 - 22394024-22394148,22394379-22394940
          Length = 228

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 725 RVPHTVCVYGIFWYSDIINTGD 660
           +VPH V   G FW+ DIIN  D
Sbjct: 41  KVPHRVFNKGSFWWRDIINLSD 62


>04_01_0519 +
           6831912-6831978,6832333-6832488,6832748-6833098,
           6833481-6833662,6833756-6834004,6834182-6834406,
           6837492-6837791,6838642-6839215,6839959-6840059
          Length = 734

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 731 VLRVPHTVCVYGIFWYSDIINTGDT-RGL 648
           V RVPH V   G FW+ DI +  D  RG+
Sbjct: 582 VSRVPHLVLNKGSFWWRDITSLSDIFRGI 610


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,817,010
Number of Sequences: 37544
Number of extensions: 266717
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)