Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40586
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    29   0.55 
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   6.8  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    26   6.8  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   9.0  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    25   9.0  

>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -1

Query: 710 LINVLE-KERDVHTHSPMASAIAPPI-NVITWIHIRENFMHLPQLSIA--PPIPITLLHN 543
           L N+LE K++DV   +   + I  P  N++  +  +EN ++   L     PP+P T + +
Sbjct: 255 LKNLLEVKDKDVEGRNEALNKILHPAKNLVELLTEKENLINESTLESPSDPPLPPTKMKD 314

Query: 542 IAVFVSL 522
           I  FVSL
Sbjct: 315 IDYFVSL 321


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 527 SLYS*PFLYFVKCALFYCLLPLYEAHYKMFSYYFLSC 417
           ++YS PF Y   C  +  +L  YE     + YY L C
Sbjct: 40  NIYSIPFFYDRICYDYKNILLKYELFIIYYYYYLLIC 76


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 473 LLPLYEAHYKMFSYYFLSCSLI 408
           ++PLY+  +K FS++  SC +I
Sbjct: 400 VMPLYDRFHKKFSFFTGSCLII 421


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 542 IAVFVS--LYS*PFLYFVKCALFYCLLPLYEA 453
           + +F+S  L+S   +YFV C  +  L+PL+ +
Sbjct: 670 VLLFISTALFSIIMIYFVFCVFYISLIPLHNS 701


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 134 SIYLLVSDNSSKDHSCL 184
           SIYLL SD++   H+CL
Sbjct: 883 SIYLLASDDTKVAHACL 899


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,114
Number of Sequences: 5004
Number of extensions: 62046
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)