Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40586
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0297 + 22056644-22058212,22058316-22058423,22058513-220586...    28   7.1  
08_02_0478 + 17621678-17623768                                         28   7.1  
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338...    28   9.4  
02_01_0388 + 2812235-2815003                                           28   9.4  

>11_06_0297 +
           22056644-22058212,22058316-22058423,22058513-22058678,
           22059000-22059056,22059382-22059479,22059556-22059765,
           22060469-22060582,22060819-22060948,22061165-22061298,
           22062279-22062359,22062798-22062872,22063210-22063221
          Length = 917

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 134 SIYLLVSDNSSKDHSCLTLIPKQLWNCLF 220
           SIY+L  DN+ KD   L +I + LW+  F
Sbjct: 645 SIYVLEKDNTDKDLIILHVIIQSLWHLRF 673


>08_02_0478 + 17621678-17623768
          Length = 696

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 579 GQLREVHEVLSNMYPRNNIDWRGYSAGHRTMGVDVAFFLK 698
           G++R+  +V   M  RN + W    AG+   G D+A  L+
Sbjct: 142 GRVRDARQVFDGMPERNTVSWNALIAGYTESG-DMASALE 180


>10_01_0307 +
           3382432-3382608,3382690-3382863,3383600-3383695,
           3384640-3384709,3385878-3386002,3387128-3387268,
           3387362-3387519,3387644-3387803,3390136-3390213,
           3390326-3390385,3390473-3390528,3391886-3392090,
           3394107-3394192,3394296-3394406,3394536-3394607,
           3395453-3395538,3395730-3395878,3396107-3396250,
           3396335-3396442,3396997-3397027,3397609-3397713,
           3398283-3398407,3398807-3398950,3399073-3399177,
           3400748-3400799,3401549-3401696,3401936-3402130,
           3402404-3402647,3403152-3403259,3403887-3404034,
           3405467-3405525,3405876-3405945,3407008-3407333,
           3407666-3409204,3410526-3410733,3410870-3410906,
           3411024-3411072,3411143-3411271
          Length = 2025

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 50  SIECVRPCLRHHLELAYLA*CDSSHLCCS 136
           SIE +R C+  HL+LA++     SH  CS
Sbjct: 801 SIE-MRTCIIFHLQLAFIKILSQSHYACS 828


>02_01_0388 + 2812235-2815003
          Length = 922

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 561 GYGWSDGQLREVHEVLSNMYPRNNIDWRGYSAGHRTMG 674
           GY   +G + E  E+   M  RN I W G  AG+   G
Sbjct: 362 GY-MQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNG 398


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,436,632
Number of Sequences: 37544
Number of extensions: 369965
Number of successful extensions: 933
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)