Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40586
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin f...    29   2.8  
AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin f...    29   2.8  
AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic avoid...    29   4.8  
AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory cha...    29   4.8  
AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical
           protein Y34D9A.3 protein.
          Length = 639

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 620 IHIRENFMHLPQLSIAPPIPITLLHNIA 537
           I I+ NF HLP +S   P P T++  I+
Sbjct: 475 IRIKSNFRHLPDISFLKPNPDTIITQIS 502


>AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform a protein.
          Length = 427

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 479 KTGHTSRNIKKVMNTKRQKRQCCG 550
           K  HT+RN+ ++M+  ++  +CCG
Sbjct: 146 KNYHTNRNLAEIMDALQENLECCG 169


>AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform b protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 479 KTGHTSRNIKKVMNTKRQKRQCCG 550
           K  HT+RN+ ++M+  ++  +CCG
Sbjct: 170 KNYHTNRNLAEIMDALQENLECCG 193


>AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic
           avoidance abnormal protein9 protein.
          Length = 937

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 753 HGHDHADRRYEHVVAHQRA*ERTRRP 676
           HGHD  DR YE  V  ++   R+R P
Sbjct: 745 HGHDRLDRVYEDHVQPEKVPSRSRTP 770


>AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory
           channel protein.
          Length = 937

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 753 HGHDHADRRYEHVVAHQRA*ERTRRP 676
           HGHD  DR YE  V  ++   R+R P
Sbjct: 745 HGHDRLDRVYEDHVQPEKVPSRSRTP 770


>AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical
           protein C02B10.5 protein.
          Length = 698

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -3

Query: 351 TTITEYSLPQLNHTKKRESHTKKDNLLNDT*IVPTNEHHRTPMQNKQFHN 202
           +T +  S PQ+N  +    ++   +   DT ++  N HH +P+    F++
Sbjct: 228 STPSTSSAPQMNQNQNTHPNSINHHHQPDTSLLMLNNHHSSPLNQLSFNH 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,448,006
Number of Sequences: 27780
Number of extensions: 347863
Number of successful extensions: 881
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)