Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40585
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    29   0.59 
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    27   3.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.6  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.6  

>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 145 TPFIKIVKISIYFVIKQHSHDVNSGHFIGHRD-IKLLQN*CK 23
           TP+IK+  +  +  IK  S D   G F+G  D I++ Q+ CK
Sbjct: 96  TPWIKMPVVKKFLNIKDESEDETQGQFLGPTDWIQVFQD-CK 136


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 314 FRIQVTDLVQTYRPRFFSFYLP 249
           F +   D + TY+  F+SFYLP
Sbjct: 184 FDLMKYDFIITYKTSFYSFYLP 205


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -3

Query: 644 PAQPLNRYIP--TFFFFL*SIYYYNVA 570
           P + +  Y P   F++ L SIY YNV+
Sbjct: 444 PGEQIEEYFPFEEFYYLLSSIYTYNVS 470


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 764 RSQPGIHRFPSRDEIRLNYISRATSAEIYR 675
           R   G+H FPS  ++  N   R++ A  YR
Sbjct: 622 RLSTGLHHFPSDRDLLSNQTRRSSLARSYR 651


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,004
Number of Sequences: 5004
Number of extensions: 52050
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)