Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40585
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0227 - 27686525-27686607,27686731-27686803,27687027-276873...    30   1.9  

>01_06_0227 -
           27686525-27686607,27686731-27686803,27687027-27687315,
           27687755-27687832,27687869-27687992,27688796-27688940,
           27689046-27689166,27689386-27689542,27690704-27690840,
           27691863-27692122,27692199-27692387,27692572-27692775,
           27693390-27693436,27694435-27694462
          Length = 644

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 77  VHIMRMLFNHKIDTNFHNF 133
           ++I+ +LFNH + TNF NF
Sbjct: 467 IYILSLLFNHNMHTNFENF 485


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,702,225
Number of Sequences: 37544
Number of extensions: 277103
Number of successful extensions: 424
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)