Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40584
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 93 4e-20
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 49 9e-07
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 42 1e-04
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 41 2e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 36 0.009
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 34 0.020
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 34 0.020
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 32 0.081
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 31 0.25
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 31 0.25
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 30 0.43
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 0.57
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 29 0.57
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 29 0.76
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 27 2.3
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 27 3.0
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 27 4.0
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 27 4.0
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 5.3
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 26 7.0
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos... 25 9.3
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 93.1 bits (221), Expect = 4e-20
Identities = 44/73 (60%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Frame = +2
Query: 257 PIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQA 433
PIERVKLL+Q Q + + RYKGI + F R E+G++S WRGN ANV+RYFPTQA
Sbjct: 47 PIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTANVLRYFPTQA 106
Query: 434 LNFAFKDKYKQVF 472
LNFAFKDK+K++F
Sbjct: 107 LNFAFKDKFKKMF 119
Score = 82.2 bits (194), Expect = 8e-17
Identities = 43/97 (44%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Frame = +1
Query: 487 QEDAVLAYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADV--GKGDGQREFSGLGNCIS 660
+ D +F SL FVY LD+ARTRLA D K G+R+F+GL +
Sbjct: 124 ERDGYAKWFAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYR 183
Query: 661 KIFKSDGLIGLYRGFGVSVQGIIIYRASYFRFLRTAR 771
K ++SDGL GLYRGFG SV GI++YR YF T +
Sbjct: 184 KTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLK 220
Score = 30.3 bits (65), Expect = 0.33
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 299 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLG 478
S + ++++ G+VD + + + GL +RG +V+ + L F D K V L
Sbjct: 166 SAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLV 225
Query: 479 G 481
G
Sbjct: 226 G 226
Score = 29.5 bits (63), Expect = 0.57
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 198 FAKDFLAGGISAAVSKTA 251
F DF+ GG+SAAVSKTA
Sbjct: 27 FFFDFMMGGVSAAVSKTA 44
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 634 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFRF 756
+ G+G C + +G+I L+RG +V +A F F
Sbjct: 71 YKGIGECFKRTAAEEGVISLWRGNTANVLRYFPTQALNFAF 111
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 48.8 bits (111), Expect = 9e-07
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +2
Query: 254 TPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQA 433
+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN N +R FP A
Sbjct: 39 SPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNCLRAFPYGA 91
Query: 434 LNFAFKDKYKQ 466
+ FA + KQ
Sbjct: 92 VQFATFNMLKQ 102
Score = 30.3 bits (65), Expect = 0.33
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 628 REFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYF 750
+E++ L + + KI+ +GLIG +RG G + Y A F
Sbjct: 54 KEYTSLTSTLVKIWNREGLIGFFRGNGTNCLRAFPYGAVQF 94
Score = 30.3 bits (65), Expect = 0.33
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 326 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 442
YK I A I K +G+ F+RG +N+++ P ++ +
Sbjct: 266 YKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIPVMSITW 304
Score = 29.9 bits (64), Expect = 0.43
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 568 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGII 729
+P D R R + G G + + + I I+K++G+ G +RG+ ++ II
Sbjct: 245 FPADVLRRRFQVNRIPGIGHN-YKNIKSAIFHIYKTEGINGFFRGYSSNMLKII 297
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +1
Query: 565 VYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 702
+YPLD +TR+ VGK D ++G +C+ KI K++G LYRG
Sbjct: 26 LYPLDVVKTRMQLSVGKSD----YNGTFDCLKKIVKNEGPHRLYRG 67
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +1
Query: 550 TSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGII 729
T V P + + RL DV +++G +C +KI K + ++ LY GF ++ +
Sbjct: 117 TETFVVVPFELMKIRLQ-DVKNAS---KYNGTVDCFTKIVKQERILALYNGFEATMWRHV 172
Query: 730 IYRASYFRFLRTARGML 780
++ A YF ++ R L
Sbjct: 173 VWNAGYFGVIQKIRNSL 189
Score = 32.3 bits (70), Expect = 0.081
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 326 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 472
Y G D +I K +G +RG ++ P +AL FA D Y +++
Sbjct: 45 YNGTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLW 93
Score = 29.9 bits (64), Expect = 0.43
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 257 PIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQA 433
P E +K+ LQ V++ SK Y G VD F +I K++ +L+ + G A + R+ A
Sbjct: 124 PFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVWNA 176
Query: 434 LNFAFKDKYK 463
F K +
Sbjct: 177 GYFGVIQKIR 186
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 41.1 bits (92), Expect = 2e-04
Identities = 23/80 (28%), Positives = 41/80 (51%)
Frame = +2
Query: 257 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 436
P++RVK+L Q H S + A R+ G+ A I GL ++G+ A + R FP +
Sbjct: 37 PLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHGLYQGHTATLYRVFPYAGI 95
Query: 437 NFAFKDKYKQVFLGGVDKKT 496
F ++ ++V + + +T
Sbjct: 96 KFVAYEQVRRVLIRDPEHET 115
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 35.5 bits (78), Expect = 0.009
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 562 FVYPLDFARTRL-AADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYR 738
F+YP+D + R+ +D+ +G + L N +++KS G+ G YRG V + G+ Y
Sbjct: 245 FIYPVDTLKFRIQCSDLSRGQHGKSII-LSNA-KELYKSVGIRGYYRGVLVGILGMFPYS 302
Query: 739 AS 744
A+
Sbjct: 303 AT 304
Score = 34.7 bits (76), Expect = 0.015
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +2
Query: 257 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 436
P+ ++ LQ Q S A Y G +D F + K +G ++G N+++ P+ A+
Sbjct: 355 PLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAPSVAI 411
Query: 437 NFAFKDKYKQ 466
++ + K+
Sbjct: 412 SYLVYENCKK 421
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +2
Query: 257 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNFANVIRYFPTQA 433
P++ +K +Q +S+ Q K I+ + + + K G+ ++RG ++ FP A
Sbjct: 248 PVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVLVGILGMFPYSA 303
Query: 434 LNFAFKDKYKQVFLG 478
+ + K+ ++G
Sbjct: 304 TDLGTFEGLKRTWIG 318
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 34.3 bits (75), Expect = 0.020
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 559 CFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYR 738
C+ PL+ AR + + + KG Q G+ I I+K++G+ GLYRG V G+ Y+
Sbjct: 220 CWNQPLEVARVEMQS-LTKGI-QHSSPGIMQTIMSIYKNNGIKGLYRG-AVPRMGLGAYQ 276
Query: 739 ASYFRFLR-TARGML 780
FL RG L
Sbjct: 277 TFVMVFLADCVRGYL 291
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 34.3 bits (75), Expect = 0.020
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 571 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGI 726
P+ +TRL D G + S + +CI K + +G GLY+G S+ G+
Sbjct: 182 PIWLVKTRLQLDKKSGQAAQYRSSI-DCIIKTIRLEGFRGLYKGLSASLLGV 232
Score = 29.9 bits (64), Expect = 0.43
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 299 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 442
S I +Y G++ F + EQG++ + G A+++R P + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 32.3 bits (70), Expect = 0.081
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +1
Query: 640 GLGNCISKIFKSDGLIGLYRGFG 708
G+ + + ++KS+GL+GL+RGFG
Sbjct: 283 GIRHVLGGLYKSEGLLGLFRGFG 305
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 30.7 bits (66), Expect = 0.25
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +2
Query: 257 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 436
PI+ VK +Q ++A + YK + +I + GLL FW G + R + +
Sbjct: 223 PIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGI 276
Query: 437 NFAFKDKYKQV 469
F +K ++
Sbjct: 277 VFTVYEKVMEI 287
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 30.7 bits (66), Expect = 0.25
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 565 VYPLDFARTRLAADVGKGDGQREFSG-LGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRA 741
+YP+D +TR+ G R SG + N + KI ++G+ L+RG + G A
Sbjct: 37 MYPVDAIKTRMQMLNGVS---RSVSGNIVNSVIKISSTEGVYSLWRGISSVIMGAGPSHA 93
Query: 742 SYFRFL 759
YF L
Sbjct: 94 IYFSVL 99
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 29.9 bits (64), Expect = 0.43
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = -2
Query: 631 HAGHLPYRHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRSTP 503
H P R R RD RS +RS R HR DY RS P
Sbjct: 140 HQSRSPVRSRDRD---RSSRSSRSRHPSSRSRHRYDDYSRSPP 179
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 29.5 bits (63), Expect = 0.57
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +2
Query: 311 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDK 490
A Y DAF +I K +GL +F+RG F ++ + F + +K K
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSLFGTLHV-GIQFPLYEYFKSFLDDFFGK 283
Query: 491 KTQF 502
K+ F
Sbjct: 284 KSNF 287
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 332 GIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKK 493
G + + I +G+ +RG ++ Y P+ ++ F +K K +F GV+KK
Sbjct: 53 GTLSSMRTIFHNEGIAGLYRGVGPMMLGYLPSWSIYFVVYEKCKVLF--GVNKK 104
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 29.5 bits (63), Expect = 0.57
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Frame = +2
Query: 254 TPIERVKLLLQVQHVSK-QIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP-- 424
TP + +QV K + A K + D + G + FW G F + + F
Sbjct: 186 TPNSAIISRMQVDRARKGEAALIWAVKSLRDGTIVSADSSGAVKFWNGKFFTLSQSFKLH 245
Query: 425 -TQALNFAFKDKYKQVFLGGVDKKT 496
AL VF G+D+KT
Sbjct: 246 LADALCLGVSANGDMVFSSGIDRKT 270
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 29.1 bits (62), Expect = 0.76
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 649 NCISKIFKSDGLIGLYRGFGVSVQGI 726
+CI K +S+G LY+GFG + I
Sbjct: 271 DCILKTIRSEGFFALYKGFGAHLARI 296
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 634 FSGLGNCISKIFKSDGLIGLYRGFGVS 714
++ + + I I+K +G+ G +RGFGV+
Sbjct: 141 YTTIYSSIRDIWKKEGISGFFRGFGVT 167
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 649 NCISKIFKSDGLIGLYRGFGVSV 717
N IS + +S+GL G YRG+ + V
Sbjct: 121 NTISTLARSEGLKGFYRGYWMGV 143
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 335 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 427
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 649 NCISKIFKSDGLIGLYRGFGVSVQGI 726
+C+ KI K++GL Y+G + + GI
Sbjct: 60 DCVKKISKNEGLAAFYKGTVLPLLGI 85
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 568 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGF 705
YP D ++++ D + + C I+ GL G YRGF
Sbjct: 231 YPFDIVKSKIQTDGFLS--KATYKNSWQCAKGIYTKAGLRGFYRGF 274
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 634 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYF 750
F + +C K++GL GLYRG + + + R+ F
Sbjct: 50 FPTIRSCFQNAVKNEGLKGLYRGLTLPLISATLSRSVSF 88
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 47 YEITPNLLFKNQELVFRDPPSACAATPTSTY 139
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 640 GLGNCISKIFKSDGLIGLYRGFGVSV 717
G G ++I+K G GL+ G GV +
Sbjct: 258 GAGAAAARIYKEIGFSGLWNGLGVRI 283
>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 455 KYKQVFLGGVDKKTQFWRTSLV 520
KY+++F+ G++ K + +TSLV
Sbjct: 59 KYQEIFIRGLENKGKLSKTSLV 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,174
Number of Sequences: 5004
Number of extensions: 57751
Number of successful extensions: 224
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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