Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40582
(701 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-... 149 9e-35
UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4; ... 138 1e-31
UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4; Endopterygot... 112 9e-24
UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular orga... 109 9e-23
UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box prot... 101 1e-20
UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular o... 101 2e-20
UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhanc... 100 4e-20
UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: ... 100 4e-20
UniRef50_O46173 Cluster: Y-box protein; n=5; cellular organisms|... 99 5e-20
UniRef50_P67809 Cluster: Nuclease sensitive element-binding prot... 99 5e-20
UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias... 100 7e-20
UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona intesti... 99 9e-20
UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius auratus... 99 1e-19
UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21; Tetrapod... 98 2e-19
UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular org... 96 8e-19
UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box fact... 93 5e-18
UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ ce... 91 2e-17
UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;... 83 5e-15
UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n... 80 5e-14
UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n... 73 9e-12
UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box ... 63 6e-09
UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep: MG... 58 2e-07
UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1; ... 58 3e-07
UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis el... 57 4e-07
UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia japo... 57 4e-07
UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;... 56 6e-07
UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n... 49 1e-04
UniRef50_UPI000155640A Cluster: PREDICTED: hypothetical protein;... 46 7e-04
UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus laev... 46 9e-04
UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep: ... 44 0.004
UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triti... 42 0.015
UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus lu... 42 0.019
UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome s... 41 0.034
UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona intesti... 40 0.045
UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12; Bacteria... 40 0.078
UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2; ... 40 0.078
UniRef50_O65639 Cluster: Glycine-rich protein; n=8; Magnoliophyt... 39 0.10
UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB... 39 0.10
UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella ve... 39 0.14
UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n... 38 0.24
UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein; ... 38 0.32
UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep: AG... 37 0.42
UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA - Myxoco... 37 0.55
UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1; ma... 37 0.55
UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein; ... 36 0.73
UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6; c... 36 0.73
UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3; ... 36 0.73
UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2; Bacteria... 36 0.73
UniRef50_P72366 Cluster: Cold shock-like protein cspA; n=29; Bac... 36 0.73
UniRef50_UPI0000589074 Cluster: PREDICTED: similar to ENSANGP000... 36 0.96
UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3; Gammaproteobac... 36 0.96
UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:... 36 0.96
UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154; Ba... 36 0.96
UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2; Bacteroi... 36 1.3
UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1; ... 36 1.3
UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n... 36 1.3
UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7; Bact... 36 1.3
UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78; B... 35 1.7
UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein; ... 35 1.7
UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep: ... 35 1.7
UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28; Bac... 35 1.7
UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39; Gammapro... 35 1.7
UniRef50_Q87NH9 Cluster: Cold shock transcriptional regulator Cs... 35 2.2
UniRef50_Q5NP11 Cluster: Cold shock protein; n=1; Zymomonas mobi... 35 2.2
UniRef50_Q9ZFK8 Cluster: CspB; n=4; cellular organisms|Rep: CspB... 35 2.2
UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=... 35 2.2
UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2; ... 35 2.2
UniRef50_A3YG84 Cluster: Cold-shock protein CspD; n=1; Marinomon... 35 2.2
UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2; M... 35 2.2
UniRef50_Q9AN51 Cluster: ID534; n=52; Bacteria|Rep: ID534 - Brad... 34 2.9
UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp. M... 34 2.9
UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1; ... 34 2.9
UniRef50_P92186 Cluster: Protein lin-28; n=5; Caenorhabditis|Rep... 34 2.9
UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular... 34 2.9
UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59; Alphapro... 34 2.9
UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:... 34 3.9
UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2; C... 34 3.9
UniRef50_A6GGG0 Cluster: Beta-lactamase; n=1; Plesiocystis pacif... 34 3.9
UniRef50_P81622 Cluster: Cold shock protein CspSt; n=6; Streptoc... 34 3.9
UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38; Gam... 34 3.9
UniRef50_P39158 Cluster: Cold shock protein cspC; n=41; Bacteria... 34 3.9
UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26; cel... 34 3.9
UniRef50_P72188 Cluster: Cold shock protein capA; n=23; Proteoba... 34 3.9
UniRef50_Q9I0L6 Cluster: Cold-shock protein CspD; n=12; Gammapro... 33 5.1
UniRef50_Q2IPN0 Cluster: Putative uncharacterized protein precur... 33 5.1
UniRef50_Q0YRJ0 Cluster: Cold-shock protein, DNA-binding; n=1; C... 33 5.1
UniRef50_A4U251 Cluster: Cold shock DNA-binding domain protein; ... 33 5.1
UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2; Acti... 33 6.8
UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44; Bacteria... 33 6.8
UniRef50_Q4KIT8 Cluster: Membrane protein, putative; n=1; Pseudo... 33 6.8
UniRef50_Q48H64 Cluster: Cold shock domain protein CspD; n=7; Pr... 33 6.8
UniRef50_Q0SKK0 Cluster: Cold shock protein; n=20; Bacteria|Rep:... 33 6.8
UniRef50_Q0M3I1 Cluster: Cold-shock protein, DNA-binding; n=1; C... 33 6.8
UniRef50_Q0BPU3 Cluster: Cold shock protein; n=1; Granulibacter ... 33 6.8
UniRef50_A7DA86 Cluster: Putative cold-shock DNA-binding domain ... 33 6.8
UniRef50_A5V9E9 Cluster: Putative cold-shock DNA-binding domain ... 33 6.8
UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein; ... 33 6.8
UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein; ... 33 6.8
UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1; Ostre... 33 6.8
UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep... 33 9.0
UniRef50_Q89KY2 Cluster: Bll4766 protein; n=5; Bradyrhizobiaceae... 33 9.0
UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5; Deinoc... 33 9.0
UniRef50_A7HXE8 Cluster: Putative cold-shock DNA-binding domain ... 33 9.0
UniRef50_A4A3Y7 Cluster: Cold-shock domain family protein; n=1; ... 33 9.0
>UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-box
protein - Bombyx mori (Silk moth)
Length = 272
Score = 149 bits (360), Expect = 9e-35
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
+FVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR
Sbjct: 63 VFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 122
Query: 434 RGYHRQYFP 460
RGYHRQYFP
Sbjct: 123 RGYHRQYFP 131
Score = 65.3 bits (152), Expect = 1e-09
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
VIAEKVSGTVKWFNVKSGYGFI RNDTKED
Sbjct: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 62
>UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4;
cellular organisms|Rep: Putative uncharacterized protein
- Lonomia obliqua (Moth)
Length = 254
Score = 138 bits (334), Expect = 1e-31
Identities = 63/69 (91%), Positives = 66/69 (95%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
+FVHQTAI RNNPRKAVRSVGDGE VEFAVVAGEKG EAAGVTGPGGEPVKGSPYAADKR
Sbjct: 54 VFVHQTAIIRNNPRKAVRSVGDGEVVEFAVVAGEKGCEAAGVTGPGGEPVKGSPYAADKR 113
Query: 434 RGYHRQYFP 460
RGY+RQY+P
Sbjct: 114 RGYYRQYYP 122
Score = 65.3 bits (152), Expect = 1e-09
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
VIAEKVSGTVKWFNVKSGYGFI RNDTKED
Sbjct: 24 VIAEKVSGTVKWFNVKSGYGFINRNDTKED 53
>UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4;
Endopterygota|Rep: Y-box protein Ct-p50 - Chironomus
tentans (Midge)
Length = 317
Score = 112 bits (269), Expect = 9e-24
Identities = 52/62 (83%), Positives = 56/62 (90%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
+FVHQ+AI +NNP+KAVRSVGDGE VEF VVAGEKG EAA VTGP GEPVKGSPYAADKR
Sbjct: 55 IFVHQSAIIKNNPKKAVRSVGDGEVVEFDVVAGEKGSEAANVTGPEGEPVKGSPYAADKR 114
Query: 434 RG 439
RG
Sbjct: 115 RG 116
Score = 58.0 bits (134), Expect = 2e-07
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
+IA KV+GTVKWFNVKSGYGFI RND K+D
Sbjct: 25 IIATKVTGTVKWFNVKSGYGFINRNDNKQD 54
>UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular
organisms|Rep: ENSANGP00000031633 - Anopheles gambiae
str. PEST
Length = 166
Score = 109 bits (261), Expect = 9e-23
Identities = 52/66 (78%), Positives = 57/66 (86%)
Frame = +2
Query: 245 QGRLFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 424
Q +FVHQ+AIARNNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPVKGS YAA
Sbjct: 32 QEDVFVHQSAIARNNPKKAVRSVGDGEQVEFDVVIGEKGNEAANVTGPQGEPVKGSQYAA 91
Query: 425 DKRRGY 442
+KRRG+
Sbjct: 92 EKRRGF 97
Score = 55.6 bits (128), Expect = 1e-06
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
VIA KV+G VKWFNVKSGYGFI R DT+ED
Sbjct: 5 VIATKVTGVVKWFNVKSGYGFINRGDTQED 34
>UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box protein
Ct-p40; n=1; Nasonia vitripennis|Rep: PREDICTED: similar
to Y-box protein Ct-p40 - Nasonia vitripennis
Length = 335
Score = 101 bits (243), Expect = 1e-20
Identities = 51/68 (75%), Positives = 54/68 (79%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
+FV Q I+ N P KAVRSVGDGE VEF VV GEKG EAA VTGP GE VKGSPYAADKR
Sbjct: 94 IFVCQRCISNNLPSKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPDGEAVKGSPYAADKR 153
Query: 434 RGYHRQYF 457
RGY RQY+
Sbjct: 154 RGY-RQYY 160
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRN 239
+IA KV+GTVKWFNVKSGYGFI R+
Sbjct: 64 IIANKVTGTVKWFNVKSGYGFINRS 88
>UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular
organisms|Rep: DNA-binding protein A - Homo sapiens
(Human)
Length = 372
Score = 101 bits (242), Expect = 2e-20
Identities = 49/68 (72%), Positives = 55/68 (80%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
+FVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+R
Sbjct: 116 VFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRR 175
Query: 434 RGYHRQYF 457
R Y R Y+
Sbjct: 176 R-YRRGYY 182
Score = 57.2 bits (132), Expect = 4e-07
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
V+A KV GTVKWFNV++GYGFI RNDTKED
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTKED 115
>UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhancer
factor II; n=1; Gallus gallus|Rep: Rous sarcoma virus
transcription enhancer factor II - Gallus gallus
(Chicken)
Length = 298
Score = 100 bits (239), Expect = 4e-20
Identities = 49/68 (72%), Positives = 54/68 (79%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
+FVHQTAI +NNPRK + SVGDGE VEF VV GEKG EAA VTGP G PV+GS YAAD+R
Sbjct: 113 VFVHQTAIKKNNPRKYLASVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRR 172
Query: 434 RGYHRQYF 457
R Y R YF
Sbjct: 173 R-YRRGYF 179
Score = 57.2 bits (132), Expect = 4e-07
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
V+A KV GTVKWFNV++GYGFI RNDTKED
Sbjct: 83 VLATKVLGTVKWFNVRNGYGFINRNDTKED 112
>UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: DNA
binding protein - Canis familiaris (Dog)
Length = 96
Score = 100 bits (239), Expect = 4e-20
Identities = 48/68 (70%), Positives = 55/68 (80%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
+FVHQTAI +NNPRK +RSVGDGE V+F VV GEKG EAA VTGP G PV+GS YAAD+R
Sbjct: 18 VFVHQTAIKKNNPRKYLRSVGDGETVQFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRR 77
Query: 434 RGYHRQYF 457
R Y R Y+
Sbjct: 78 R-YRRGYY 84
Score = 35.9 bits (79), Expect = 0.96
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 204 NVKSGYGFIXRNDTKED 254
NV++GYGFI RNDTKED
Sbjct: 1 NVRNGYGFINRNDTKED 17
>UniRef50_O46173 Cluster: Y-box protein; n=5; cellular
organisms|Rep: Y-box protein - Drosophila melanogaster
(Fruit fly)
Length = 359
Score = 99 bits (238), Expect = 5e-20
Identities = 48/63 (76%), Positives = 54/63 (85%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
+FVHQ+AIA NNP+KAVRSVGDGE VEF VV GEKG EAA VTGP GEPV+GS +AADKR
Sbjct: 88 VFVHQSAIA-NNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKR 146
Query: 434 RGY 442
R +
Sbjct: 147 RNF 149
Score = 60.5 bits (140), Expect = 4e-08
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
VIA KV+GTVKWFNVKSGYGFI RNDT+ED
Sbjct: 58 VIATKVTGTVKWFNVKSGYGFINRNDTRED 87
>UniRef50_P67809 Cluster: Nuclease sensitive element-binding protein
1; n=65; Coelomata|Rep: Nuclease sensitive
element-binding protein 1 - Homo sapiens (Human)
Length = 324
Score = 99 bits (238), Expect = 5e-20
Identities = 48/67 (71%), Positives = 55/67 (82%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
+FVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PV+GS YAAD
Sbjct: 84 VFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAAD-- 141
Query: 434 RGYHRQY 454
R ++R+Y
Sbjct: 142 RNHYRRY 148
Score = 58.0 bits (134), Expect = 2e-07
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
VIA KV GTVKWFNV++GYGFI RNDTKED
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKED 83
>UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias
latipes|Rep: Cold-shock domain protein - Oryzias latipes
(Medaka fish) (Japanese ricefish)
Length = 366
Score = 99.5 bits (237), Expect = 7e-20
Identities = 47/69 (68%), Positives = 55/69 (79%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
+FVHQTAI +NNPRK +RSVGDGE VEF V+ KG EAA VTGPGG PVKGS YA +KR
Sbjct: 28 VFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGPGGIPVKGSRYAPNKR 87
Query: 434 RGYHRQYFP 460
R + R++FP
Sbjct: 88 R-FRRRFFP 95
Score = 52.4 bits (120), Expect = 1e-05
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +3
Query: 180 VSGTVKWFNVKSGYGFIXRNDTKED 254
V GTVKWFNV++GYGFI RNDTKED
Sbjct: 3 VQGTVKWFNVRNGYGFINRNDTKED 27
>UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona
intestinalis|Rep: Y-box protein 1/2/3 - Ciona
intestinalis (Transparent sea squirt)
Length = 320
Score = 99.1 bits (236), Expect = 9e-20
Identities = 49/70 (70%), Positives = 56/70 (80%), Gaps = 1/70 (1%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF-EAAGVTGPGGEPVKGSPYAADK 430
+F+HQTAI +NNP+K +RSVGDGE VEF VV GEKG EAA VTGP GEPVKGS YAAD+
Sbjct: 51 VFIHQTAIIKNNPKKYLRSVGDGENVEFDVVEGEKGLPEAANVTGPNGEPVKGSKYAADR 110
Query: 431 RRGYHRQYFP 460
RR Y +Y P
Sbjct: 111 RR-YKPRYKP 119
Score = 49.2 bits (112), Expect = 1e-04
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
V+A SG VKWFNV++GYGF+ R+D KED
Sbjct: 21 VLASHCSGVVKWFNVRNGYGFVNRDDNKED 50
>UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius
auratus|Rep: Y box protein 2 - Carassius auratus
(Goldfish)
Length = 297
Score = 98.7 bits (235), Expect = 1e-19
Identities = 47/69 (68%), Positives = 55/69 (79%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
+FVHQTAI +NNPRK +RSVGDGE VEF VV KG EAA VTGPGG PVKGS YA +KR
Sbjct: 46 VFVHQTAIKKNNPRKFLRSVGDGEVVEFDVVEAAKGSEAANVTGPGGIPVKGSRYAPNKR 105
Query: 434 RGYHRQYFP 460
R + R+++P
Sbjct: 106 R-FRRRFYP 113
Score = 56.0 bits (129), Expect = 8e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
VIA V GTVKWFNV++GYGFI RNDTKED
Sbjct: 16 VIATGVEGTVKWFNVRNGYGFINRNDTKED 45
>UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21;
Tetrapoda|Rep: Y-box-binding protein 2 - Homo sapiens
(Human)
Length = 364
Score = 97.9 bits (233), Expect = 2e-19
Identities = 47/69 (68%), Positives = 54/69 (78%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
+FVHQTAI RNNPRK +RSVGDGE VEF VV GEKG EA VTGPGG PVKGS YA ++R
Sbjct: 119 VFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRR 178
Query: 434 RGYHRQYFP 460
+ R++ P
Sbjct: 179 KS--RRFIP 185
Score = 54.8 bits (126), Expect = 2e-06
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
V+A +V GTVKWFNV++GYGFI RNDTKED
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINRNDTKED 118
>UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular
organisms|Rep: Y-box factor homolog - Aplysia
californica (California sea hare)
Length = 253
Score = 95.9 bits (228), Expect = 8e-19
Identities = 46/69 (66%), Positives = 53/69 (76%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
+FVHQTAI +NNPRK +RSVGDGE VEF VV GEKG EAA VTGP G V+GS YAAD+R
Sbjct: 58 VFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSKYAADRR 117
Query: 434 RGYHRQYFP 460
R ++P
Sbjct: 118 RFRRGGWYP 126
Score = 59.3 bits (137), Expect = 9e-08
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
+IA +VSGTVKWFNVKSGYGFI R+DTKED
Sbjct: 28 IIASQVSGTVKWFNVKSGYGFINRDDTKED 57
>UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box factor;
n=4; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to Y-Box factor - Strongylocentrotus purpuratus
Length = 326
Score = 93.5 bits (222), Expect = 5e-18
Identities = 46/61 (75%), Positives = 48/61 (78%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
+FVHQ+AI RNNPRK RSVGDGE VEF VV G KG EAA VTGP G PV GS YAADKR
Sbjct: 49 VFVHQSAIVRNNPRKYQRSVGDGEVVEFDVVEGTKGNEAARVTGPEGAPVVGSKYAADKR 108
Query: 434 R 436
R
Sbjct: 109 R 109
Score = 58.8 bits (136), Expect = 1e-07
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
V+A KVSGTVKWFNVK+GYGFI R+DTKED
Sbjct: 19 VLATKVSGTVKWFNVKNGYGFINRDDTKED 48
>UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ
cell-specific Y-box-binding protein) (Contrin) (MSY2
homolog).; n=1; Xenopus tropicalis|Rep: Y-box-binding
protein 2 (Germ cell-specific Y-box-binding protein)
(Contrin) (MSY2 homolog). - Xenopus tropicalis
Length = 199
Score = 91.5 bits (217), Expect = 2e-17
Identities = 45/64 (70%), Positives = 49/64 (76%)
Frame = +2
Query: 269 TAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHR 448
TAI RNNPRK +RSVGDGE VEF VV GEKG EAA VTGPGG PVKGS +A ++RR R
Sbjct: 70 TAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRFAPNRRRFRRR 129
Query: 449 QYFP 460
Y P
Sbjct: 130 FYRP 133
>UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-1 - Caenorhabditis elegans
Length = 208
Score = 83.4 bits (197), Expect = 5e-15
Identities = 38/59 (64%), Positives = 44/59 (74%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 430
+FVHQTAI NNP K +RS+GD E V F +V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 46 IFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKYAADR 104
Score = 52.8 bits (121), Expect = 8e-06
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
V A KV GTVKWFNVK+GYGFI R DT ED
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNED 45
>UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B3F UniRef100 entry -
Rattus norvegicus
Length = 292
Score = 80.2 bits (189), Expect = 5e-14
Identities = 38/65 (58%), Positives = 46/65 (70%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
+FVHQTA+ +N+PRK +RSVGD E VEF V GEK EAA VTG GG PV+ S Y AD+
Sbjct: 56 VFVHQTAMKKNDPRKYLRSVGDAETVEFDFVEGEKDVEAASVTGLGGVPVQDSKYTADRN 115
Query: 434 RGYHR 448
H+
Sbjct: 116 HCKHQ 120
Score = 36.7 bits (81), Expect = 0.55
Identities = 19/30 (63%), Positives = 21/30 (70%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
VIA KV GT+K V +G G I RNDTKED
Sbjct: 26 VIATKVLGTMKCSIVWNGCGLINRNDTKED 55
>UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC181B UniRef100 entry -
Rattus norvegicus
Length = 210
Score = 72.5 bits (170), Expect = 9e-12
Identities = 35/57 (61%), Positives = 42/57 (73%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAA 424
+FVHQTAI +NNPRK + + GD E VEF V+ GEK EAA + GPGG V+GS YAA
Sbjct: 54 VFVHQTAIKKNNPRKYLHTTGDRETVEFDVIEGEKDAEAANIIGPGG--VQGSQYAA 108
>UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box
protein - Dugesia japonica (Planarian)
Length = 266
Score = 63.3 bits (147), Expect = 6e-09
Identities = 32/69 (46%), Positives = 44/69 (63%)
Frame = +2
Query: 242 HQGRLFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 421
+Q +F+HQ+AI ++NP +SVG+GE + F +V G KG EAA V+ G+ VKGS YA
Sbjct: 50 NQEDIFIHQSAIVKSNPDHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 109
Query: 422 ADKRRGYHR 448
RG R
Sbjct: 110 LRYPRGRGR 118
Score = 46.4 bits (105), Expect = 7e-04
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +3
Query: 180 VSGTVKWFNVKSGYGFIXRNDTKED 254
++G VKWFNVK GYGF+ RND +ED
Sbjct: 29 ITGKVKWFNVKRGYGFVCRNDNQED 53
>UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep:
MGC115344 protein - Xenopus laevis (African clawed frog)
Length = 221
Score = 58.0 bits (134), Expect = 2e-07
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
V+A KV GTVKWFNV++GYGFI RNDTKED
Sbjct: 31 VLATKVQGTVKWFNVRNGYGFINRNDTKED 60
Score = 46.4 bits (105), Expect = 7e-04
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2
Query: 356 KGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYF 457
+G EAA VTGP G PV+GS YAAD+RR Y R Y+
Sbjct: 65 QGAEAANVTGPKGAPVQGSRYAADRRR-YRRGYY 97
>UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 192
Score = 57.6 bits (133), Expect = 3e-07
Identities = 30/65 (46%), Positives = 42/65 (64%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKR 433
+FVH++ I + N +S+GDGE VEF ++A + VTGPG +PVKGSP+ A +
Sbjct: 59 IFVHKSCIFKPNRNHFTKSIGDGEIVEFGLIASK-------VTGPGFKPVKGSPFVA--K 109
Query: 434 RGYHR 448
RG HR
Sbjct: 110 RGGHR 114
Score = 46.8 bits (106), Expect = 5e-04
Identities = 17/28 (60%), Positives = 24/28 (85%)
Frame = +3
Query: 171 AEKVSGTVKWFNVKSGYGFIXRNDTKED 254
+++++GTVKWFN K G+GFI R+DT ED
Sbjct: 31 SKRITGTVKWFNAKDGFGFITRHDTGED 58
>UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis
elegans|Rep: Y-box protein 2 - Caenorhabditis elegans
Length = 267
Score = 57.2 bits (132), Expect = 4e-07
Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPY 418
+FVHQTAIA++ K +R++GD E V F +V G+ G EAA VTGP G+ V GS Y
Sbjct: 91 IFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146
Score = 35.5 bits (78), Expect = 1.3
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +3
Query: 168 IAEKVSGTVKWFNVKSGYGFIXRNDTKEDCLCIRLPSPVTTHVRLCARSATER 326
I + G VKW++V YGFI RND ++D + H A+SATE+
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKD---------IFVHQTAIAKSATEK 105
>UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia
japonica|Rep: Y-Box factor protein - Dugesia japonica
(Planarian)
Length = 178
Score = 57.2 bits (132), Expect = 4e-07
Identities = 30/56 (53%), Positives = 38/56 (67%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 421
+FVHQ+AI+R P K +S+G+ E V F VV G KG EA VTGP G+ V GS +A
Sbjct: 28 VFVHQSAISRCQPGKQ-KSLGEDEDVLFDVVKGSKGNEAMNVTGPNGDAVLGSKFA 82
Score = 41.5 bits (93), Expect = 0.019
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFIXRNDTKED 254
G VKW+NVK GYGFI R+D ED
Sbjct: 5 GKVKWYNVKKGYGFIHRDDVDED 27
>UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-4 - Caenorhabditis elegans
Length = 294
Score = 56.4 bits (130), Expect = 6e-07
Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = +2
Query: 257 FVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 421
FVHQTAI +++ K +R++ D E V F +V G KG EAA VTGP GE V+GS +A
Sbjct: 118 FVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
Score = 32.7 bits (71), Expect = 9.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
VI V G VKWF+V+ YGF+ R+ ++
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDE 113
>UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B82 UniRef100 entry -
Rattus norvegicus
Length = 147
Score = 49.2 bits (112), Expect = 1e-04
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
VIA KV G V WFNV++GY FI RNDTKED
Sbjct: 91 VIAMKVLGIVTWFNVRNGYVFINRNDTKED 120
Score = 38.3 bits (85), Expect = 0.18
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +2
Query: 257 FVHQTAIARNNPRKAVRSVGDGEAVE 334
FVHQT I +NNP K + SVGDGE VE
Sbjct: 122 FVHQTVIKKNNP-KYLHSVGDGETVE 146
>UniRef50_UPI000155640A Cluster: PREDICTED: hypothetical protein;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein - Ornithorhynchus anatinus
Length = 502
Score = 46.4 bits (105), Expect = 7e-04
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKEDCLC--IRLPSPVTTHVRLCARSATERRWSL 338
V+A +V GTVKWFNV++GYGFI R + C C P T R +R+ L
Sbjct: 56 VLATQVLGTVKWFNVRNGYGFINRYRSAPGCGCGSRGRGGPSTRGARSASRAPDNPAKLL 115
Query: 339 PWLP 350
P+ P
Sbjct: 116 PFSP 119
>UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus
laevis|Rep: LOC100036881 protein - Xenopus laevis
(African clawed frog)
Length = 131
Score = 46.0 bits (104), Expect = 9e-04
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +2
Query: 185 GHCEMVQRQEWIWFHXQE*HQGRLFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG- 361
G C+ ++ F + +FVHQ+ I + RS+ +GE VEF+V+ E+
Sbjct: 6 GTCKWFNAEKGYGFLTPDDGSPDIFVHQSTIHADG----FRSLAEGEPVEFSVITDERSG 61
Query: 362 -FEAAGVTGPGGEPVKGSP 415
+AA VTGP G V+G+P
Sbjct: 62 KLKAADVTGPNGAAVRGAP 80
Score = 36.3 bits (80), Expect = 0.73
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 177 KVSGTVKWFNVKSGYGFIXRNDTKED 254
K++GT KWFN + GYGF+ +D D
Sbjct: 3 KLTGTCKWFNAEKGYGFLTPDDGSPD 28
>UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep:
Lin-28 homolog B - Homo sapiens (Human)
Length = 250
Score = 44.0 bits (99), Expect = 0.004
Identities = 23/53 (43%), Positives = 30/53 (56%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 412
+FVHQ+ + + RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 62 VFVHQSKLFM----EGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triticum
aestivum|Rep: Cold shock domain protein 3 - Triticum
aestivum (Wheat)
Length = 231
Score = 41.9 bits (94), Expect = 0.015
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 168 IAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
+ E+V GTVKWFNV G+GFI +D ED
Sbjct: 1 MGERVKGTVKWFNVTKGFGFISPDDGGED 29
>UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 106
Score = 41.5 bits (93), Expect = 0.019
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 242 HQG--RLFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 415
H G +FVHQT I+ RSV +GE VE+ V + +A VTGP G VKG+P
Sbjct: 24 HDGSEEIFVHQTGISC----AGFRSVWEGEEVEYDVDDTDFAPKAVNVTGPDGVAVKGAP 79
Query: 416 YAADKRR 436
+ R
Sbjct: 80 RRRHRNR 86
Score = 34.3 bits (75), Expect = 2.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 168 IAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
+A + G VKWFN G+GFI +D E+
Sbjct: 1 MATRARGKVKWFNATKGFGFIIPHDGSEE 29
>UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome
shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 14
SCAF14723, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 206
Score = 40.7 bits (91), Expect = 0.034
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = +2
Query: 305 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 412
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 111 RSLKEGEQVEFTFKKSTKGLESLRVTGPGGGPCAGS 146
>UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona
intestinalis|Rep: Zinc finger protein - Ciona
intestinalis (Transparent sea squirt)
Length = 193
Score = 40.3 bits (90), Expect = 0.045
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 412
+FVHQ++I + RS+ +G+ V+F +KG EA V GPGGE + G+
Sbjct: 55 VFVHQSSI----DMEGFRSLQEGDRVKFWYKPSKKGLEAVKVVGPGGEKLVGA 103
>UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12;
Bacteria|Rep: Cold shock protein CspA - Pseudomonas
stutzeri (strain A1501)
Length = 136
Score = 39.5 bits (88), Expect = 0.078
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRND 242
V+AE+ +GTVKWFN GYGFI R +
Sbjct: 67 VMAERETGTVKWFNDAKGYGFIQRGN 92
Score = 35.5 bits (78), Expect = 1.3
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTG 385
+FVH AI + R S+ +G+ VEF+V+ G+KG +A V G
Sbjct: 96 VFVHYRAIRGDGHR----SLAEGQQVEFSVIQGQKGLQAEDVAG 135
>UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 238
Score = 39.5 bits (88), Expect = 0.078
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPV 403
LFVHQ+++ + RS+ DG+ VEF+V +G G +A VT PGG V
Sbjct: 31 LFVHQSSLKSDG----YRSLNDGDVVEFSVGSGNDGRTKAVNVTAPGGRAV 77
Score = 38.3 bits (85), Expect = 0.18
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +3
Query: 171 AEKVSGTVKWFNVKSGYGFIXRNDTKED 254
+E+V GTVKWF+ G+GFI +D ED
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGED 30
>UniRef50_O65639 Cluster: Glycine-rich protein; n=8;
Magnoliophyta|Rep: Glycine-rich protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 299
Score = 39.1 bits (87), Expect = 0.10
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVK 406
LFVHQ++I + RS+ G+AVEFA+ G G +A VT PGG +K
Sbjct: 36 LFVHQSSIVS----EGYRSLTVGDAVEFAITQGSDGKTKAVNVTAPGGGSLK 83
>UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB
fold; n=2; Cryptosporidium|Rep: Cold shock RNA binding
domain of the OB fold - Cryptosporidium parvum Iowa II
Length = 135
Score = 39.1 bits (87), Expect = 0.10
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF-EAAGVTGPGGEPVKGSPYAADK 430
+FVHQ +N + RS+ E VE+ + +KG +A V+GP G PVKG D+
Sbjct: 36 IFVHQ----QNIKVEGFRSLAQDERVEYEIETDDKGRRKAVNVSGPNGAPVKG-----DR 86
Query: 431 RRGYHR 448
RRG R
Sbjct: 87 RRGRGR 92
>UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 671
Score = 38.7 bits (86), Expect = 0.14
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 412
+FVHQ+AI + RS+ +GE V+ + +KG A VT PGG VKG+
Sbjct: 508 VFVHQSAIKASG----YRSLEEGEHVQLTISNSDKGKVAICVTSPGGGNVKGA 556
Score = 36.7 bits (81), Expect = 0.55
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +3
Query: 183 SGTVKWFNVKSGYGFIXRNDTKED 254
+G+VKWFN+ G+GFI R+D ED
Sbjct: 484 TGSVKWFNLIKGFGFITRDDGGED 507
>UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n=1;
unknown|Rep: UPI00015BD510 UniRef100 entry - unknown
Length = 86
Score = 37.9 bits (84), Expect = 0.24
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 180 VSGTVKWFNVKSGYGFIXRNDTKED 254
++GTVKWF+ + GYGF+ R+D + D
Sbjct: 18 ITGTVKWFSKEKGYGFLTRDDNQGD 42
>UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein;
n=30; Proteobacteria|Rep: Cold-shock DNA-binding domain
protein - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 249
Score = 37.5 bits (83), Expect = 0.32
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3
Query: 174 EKVSGTVKWFNVKSGYGFIXRNDTKED 254
E+ SGTVK+FN G+GFI R+D + D
Sbjct: 179 ERTSGTVKFFNTTKGFGFIARDDGQAD 205
Score = 33.5 bits (73), Expect = 5.1
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFIXRNDTKED 254
GTVK+FN G+GF+ R+D ED
Sbjct: 86 GTVKFFNPSKGFGFVARDDGGED 108
>UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep:
AGR_C_161p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 163
Score = 37.1 bits (82), Expect = 0.42
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 183 SGTVKWFNVKSGYGFIXRNDTKED 254
+GTVKWFN GYGFI +D +D
Sbjct: 97 TGTVKWFNATKGYGFIQPDDGSQD 120
>UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA -
Myxococcus xanthus
Length = 68
Score = 36.7 bits (81), Expect = 0.55
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 183 SGTVKWFNVKSGYGFIXRNDTKEDCLC 263
+GTVKWFN G+GFI ++D D C
Sbjct: 3 TGTVKWFNDAKGFGFIAQDDGGADVFC 29
>UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Cold-shock
DNA-binding protein - marine gamma proteobacterium
HTCC2143
Length = 144
Score = 36.7 bits (81), Expect = 0.55
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFIXRNDTKE 251
GTVKWFNV GYGF+ R +E
Sbjct: 79 GTVKWFNVSKGYGFVTRASGEE 100
>UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 70
Score = 36.3 bits (80), Expect = 0.73
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 183 SGTVKWFNVKSGYGFIXRNDTKED 254
+GTVKWFNV+ G+GFI +D D
Sbjct: 3 TGTVKWFNVQKGFGFIAPDDGGSD 26
>UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6;
cellular organisms|Rep: Cold-shock protein, DNA-binding
- Enterococcus faecium DO
Length = 35
Score = 36.3 bits (80), Expect = 0.73
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 183 SGTVKWFNVKSGYGFIXRND 242
+GTVKWFN + G+GFI R D
Sbjct: 3 NGTVKWFNAEKGFGFISRED 22
>UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3;
Bacteria|Rep: Cold-shock domain family protein -
Neptuniibacter caesariensis
Length = 149
Score = 36.3 bits (80), Expect = 0.73
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 174 EKVSGTVKWFNVKSGYGFIXRND 242
++ GTVKWFNV G+GFI R +
Sbjct: 81 DREQGTVKWFNVSKGFGFITRGE 103
>UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2;
Bacteria|Rep: Conserved domain protein - Stigmatella
aurantiaca DW4/3-1
Length = 100
Score = 36.3 bits (80), Expect = 0.73
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 183 SGTVKWFNVKSGYGFIXRNDTKEDCLC 263
+GTVKWFN G+GFI ++ ED C
Sbjct: 36 TGTVKWFNDAKGFGFITQDGGGEDVFC 62
>UniRef50_P72366 Cluster: Cold shock-like protein cspA; n=29;
Bacteria|Rep: Cold shock-like protein cspA - Stigmatella
aurantiaca
Length = 68
Score = 36.3 bits (80), Expect = 0.73
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 183 SGTVKWFNVKSGYGFIXRNDTKEDCLC 263
+GTVKWFN G+GFI ++ ED C
Sbjct: 3 TGTVKWFNDAKGFGFITQDGGGEDVFC 29
>UniRef50_UPI0000589074 Cluster: PREDICTED: similar to
ENSANGP00000011455; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000011455
- Strongylocentrotus purpuratus
Length = 234
Score = 35.9 bits (79), Expect = 0.96
Identities = 26/76 (34%), Positives = 32/76 (42%)
Frame = +2
Query: 185 GHCEMVQRQEWIWFHXQE*HQGRLFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 364
G C+ + F + G +FVHQ I RS+ E VE+ EKG
Sbjct: 65 GKCKWFSLAKCYGFLTPDDGSGDVFVHQRVIKM----VGYRSLDTNEEVEYKFQFSEKGR 120
Query: 365 EAAGVTGPGGEPVKGS 412
EA VTG G KGS
Sbjct: 121 EATTVTGVDGGDCKGS 136
>UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3;
Gammaproteobacteria|Rep: Cold shock protein - Vibrio
angustum S14
Length = 68
Score = 35.9 bits (79), Expect = 0.96
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 177 KVSGTVKWFNVKSGYGFIXRNDTKE 251
K++GTVKWFN G+GFI D K+
Sbjct: 3 KLTGTVKWFNDDKGFGFISGTDGKD 27
>UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:
Cold shock protein - Oceanobacter sp. RED65
Length = 171
Score = 35.9 bits (79), Expect = 0.96
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFIXRNDTKED 254
G VKWFNVK G+GFI R D ED
Sbjct: 108 GLVKWFNVKKGFGFITR-DNGED 129
>UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154;
Bacteria|Rep: Cold shock-like protein cspG - Shigella
flexneri
Length = 70
Score = 35.9 bits (79), Expect = 0.96
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 168 IAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
++ K++G VKWFN G+GFI +D +D
Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKD 29
>UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2;
Bacteroidetes/Chlorobi group|Rep: Conserved domain
protein - Salinibacter ruber (strain DSM 13855)
Length = 110
Score = 35.5 bits (78), Expect = 1.3
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 183 SGTVKWFNVKSGYGFIXRNDTKED 254
+ TVKWF+ K GYGFI D ED
Sbjct: 3 TSTVKWFDAKKGYGFIHHPDDGED 26
>UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus obeum ATCC 29174|Rep: Putative
uncharacterized protein - Ruminococcus obeum ATCC 29174
Length = 75
Score = 35.5 bits (78), Expect = 1.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 168 IAEKVSGTVKWFNVKSGYGFIXRND 242
++E + GTVKWF+ + GYGFI D
Sbjct: 1 MSETLQGTVKWFSAQKGYGFITGED 25
>UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n=2;
cellular organisms|Rep: Cold shock NA binding domain
protein - Aspergillus clavatus
Length = 125
Score = 35.5 bits (78), Expect = 1.3
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +3
Query: 174 EKVSGTVKWFNVKSGYGFIXRNDTKED 254
E+ +GTVKWFN + GYGFI +T ED
Sbjct: 58 ERQNGTVKWFNDEKGYGFI-TPETGED 83
>UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7;
Bacteria|Rep: Cold shock-like protein cspJ - Salmonella
typhimurium
Length = 70
Score = 35.5 bits (78), Expect = 1.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 177 KVSGTVKWFNVKSGYGFIXRNDTKED 254
K++G VKWFN + G+GFI D +D
Sbjct: 4 KITGLVKWFNPEKGFGFITPKDGSKD 29
>UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78;
Bacteria|Rep: Cold shock DNA binding protein -
Rhodopseudomonas palustris
Length = 84
Score = 35.1 bits (77), Expect = 1.7
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFIXRNDTKED 254
GTVKWFN GYGFI +D D
Sbjct: 18 GTVKWFNATKGYGFIQPDDGGND 40
>UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein;
n=5; cellular organisms|Rep: Cold-shock DNA-binding
domain protein - Psychrobacter cryohalolentis (strain
K5)
Length = 71
Score = 35.1 bits (77), Expect = 1.7
Identities = 20/42 (47%), Positives = 26/42 (61%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGV 379
+FVH AI + RS+ DGE VEF+VV G+KG +A V
Sbjct: 29 IFVHFRAIQGDG----YRSLKDGEKVEFSVVEGDKGLQAEEV 66
>UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep:
Cold shock protein - Arthrobacter globiformis
Length = 67
Score = 35.1 bits (77), Expect = 1.7
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFIXRNDTKED 254
GTVKWFN + G+GFI +D+ D
Sbjct: 4 GTVKWFNAEKGFGFITPDDSDGD 26
>UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28;
Bacteria|Rep: Cold shock-like protein cspE - Shigella
flexneri
Length = 69
Score = 35.1 bits (77), Expect = 1.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 177 KVSGTVKWFNVKSGYGFIXRNDTKED 254
K+ G VKWFN G+GFI D +D
Sbjct: 3 KIKGNVKWFNESKGFGFITPEDGSKD 28
>UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39;
Gammaproteobacteria|Rep: Cold shock protein cspA -
Salmonella typhimurium
Length = 70
Score = 35.1 bits (77), Expect = 1.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 177 KVSGTVKWFNVKSGYGFIXRNDTKED 254
K++G VKWFN G+GFI +D +D
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKD 29
>UniRef50_Q87NH9 Cluster: Cold shock transcriptional regulator CspA;
n=21; Bacteria|Rep: Cold shock transcriptional regulator
CspA - Vibrio parahaemolyticus
Length = 70
Score = 34.7 bits (76), Expect = 2.2
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +3
Query: 168 IAEKVSGTVKWFNVKSGYGFIXRNDTKEDCLCIRLPSPVTT 290
++ K +G+VKWFN G+GFI + ED L + S V+T
Sbjct: 1 MSNKSTGSVKWFNETKGFGFISPENGGED-LFVHFQSIVST 40
>UniRef50_Q5NP11 Cluster: Cold shock protein; n=1; Zymomonas
mobilis|Rep: Cold shock protein - Zymomonas mobilis
Length = 174
Score = 34.7 bits (76), Expect = 2.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 189 TVKWFNVKSGYGFIXRNDTKED 254
TVKWFN GYGF+ RN ++D
Sbjct: 108 TVKWFNRTKGYGFLIRNADQQD 129
>UniRef50_Q9ZFK8 Cluster: CspB; n=4; cellular organisms|Rep: CspB -
Myxococcus xanthus
Length = 66
Score = 34.7 bits (76), Expect = 2.2
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFIXRNDTKEDCLC 263
GTVKWFN G+GFI + D ED C
Sbjct: 4 GTVKWFNDAKGFGFIAQ-DNGEDVFC 28
>UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=1;
uncultured bacterium BAC17H8|Rep: Predicted cold shock
family protein - uncultured bacterium BAC17H8
Length = 83
Score = 34.7 bits (76), Expect = 2.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFIXRNDTKED 254
GTVKWFN + GYGFI ++ D
Sbjct: 18 GTVKWFNTQKGYGFINPDEDGND 40
>UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2;
cellular organisms|Rep: Putative uncharacterized protein
- Ruminococcus obeum ATCC 29174
Length = 66
Score = 34.7 bits (76), Expect = 2.2
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFIXRND 242
GTVKWFN + GYGFI D
Sbjct: 4 GTVKWFNAEKGYGFITGED 22
>UniRef50_A3YG84 Cluster: Cold-shock protein CspD; n=1; Marinomonas
sp. MED121|Rep: Cold-shock protein CspD - Marinomonas
sp. MED121
Length = 92
Score = 34.7 bits (76), Expect = 2.2
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFIXRNDTKED 254
GTVKWFN GYGFI +ED
Sbjct: 4 GTVKWFNNAKGYGFIVSESFEED 26
>UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2;
Marinomonas|Rep: Cold-shock protein, DNA-binding -
Marinomonas sp. MED121
Length = 79
Score = 34.7 bits (76), Expect = 2.2
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 168 IAEKVSGTVKWFNVKSGYGFIXRND 242
+ +K+ GTVKWFN G GFI R++
Sbjct: 1 MTDKLKGTVKWFNDSKGVGFIQRDN 25
>UniRef50_Q9AN51 Cluster: ID534; n=52; Bacteria|Rep: ID534 -
Bradyrhizobium japonicum
Length = 120
Score = 34.3 bits (75), Expect = 2.9
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFIXRNDTKED 254
GTVKWFN GYGF+ +D +D
Sbjct: 56 GTVKWFNPTKGYGFVAPDDGGKD 78
>UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp.
MED297|Rep: Cold shock protein - Reinekea sp. MED297
Length = 153
Score = 34.3 bits (75), Expect = 2.9
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 174 EKVSGTVKWFNVKSGYGFIXRNDTKED 254
++ G VKWFNV G+GF+ R D ED
Sbjct: 84 DREEGLVKWFNVSKGFGFVTR-DNGED 109
>UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 189
Score = 34.3 bits (75), Expect = 2.9
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 171 AEKVSGTVKWFNVKSGYGFIXRNDTKED 254
+++ +GTVKWF+ + G+GFI +D ED
Sbjct: 4 SKRSTGTVKWFSGQKGFGFIAPDDGGED 31
Score = 33.9 bits (74), Expect = 3.9
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVKG 409
LFVHQT+I + R++ +GE VEFAV GE G +A VT G G
Sbjct: 32 LFVHQTSIRSDG----FRTLSEGETVEFAVDHGEDGRTKAVEVTAVRGSYSSG 80
>UniRef50_P92186 Cluster: Protein lin-28; n=5; Caenorhabditis|Rep:
Protein lin-28 - Caenorhabditis elegans
Length = 227
Score = 34.3 bits (75), Expect = 2.9
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFIXRNDTKED 254
G+ KWFNV GYGF+ + T ED
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGED 77
>UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular
organisms|Rep: Glycine-rich protein 2b - Arabidopsis
thaliana (Mouse-ear cress)
Length = 201
Score = 34.3 bits (75), Expect = 2.9
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF-EAAGVTGPGGEPVKGS 412
LFVHQ++I + RS+ E+VEF V G +A V+GP G PV+G+
Sbjct: 40 LFVHQSSIRS----EGFRSLAAEESVEFDVEVDNSGRPKAIEVSGPDGAPVQGN 89
Score = 33.5 bits (73), Expect = 5.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 174 EKVSGTVKWFNVKSGYGFIXRNDTKED 254
++ GTVKWF+ + G+GFI +D +D
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDD 39
>UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59;
Alphaproteobacteria|Rep: Cold shock protein cspA -
Rhizobium meliloti (Sinorhizobium meliloti)
Length = 69
Score = 34.3 bits (75), Expect = 2.9
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 183 SGTVKWFNVKSGYGFIXRNDTKED 254
SGTVKWFN G+GFI +D D
Sbjct: 3 SGTVKWFNSTKGFGFIQPDDGATD 26
>UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:
Cold shock protein - Methylococcus capsulatus
Length = 69
Score = 33.9 bits (74), Expect = 3.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 168 IAEKVSGTVKWFNVKSGYGFIXRND 242
++++ GTVKWFN G+GFI R +
Sbjct: 1 MSQQQQGTVKWFNESKGFGFIQREN 25
>UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2;
Clostridium|Rep: Cold-shock protein, DNA-binding -
Clostridium phytofermentans ISDg
Length = 70
Score = 33.9 bits (74), Expect = 3.9
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +3
Query: 183 SGTVKWFNVKSGYGFIXRNDTKE 251
+GTVKW++ + GYGF+ ND ++
Sbjct: 5 TGTVKWYDSERGYGFVSTNDGRD 27
>UniRef50_A6GGG0 Cluster: Beta-lactamase; n=1; Plesiocystis pacifica
SIR-1|Rep: Beta-lactamase - Plesiocystis pacifica SIR-1
Length = 615
Score = 33.9 bits (74), Expect = 3.9
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Frame = +2
Query: 179 SIGHCEMVQRQEWIWFHXQE*HQGRLFVHQTA---IARNNPRKAV--RSVGDGEAVEFAV 343
S G+ + R E+ W H GR F H + + AV S+G GEAVE
Sbjct: 331 SFGYAWFLDRHEFDWLGSVASHGGRTFYHHAVLIILPEHGLAVAVAANSLGAGEAVETLA 390
Query: 344 VAG--EKGFEAAGVTGPGGEPVKGSPYAADKRR 436
+E G+ PGG P P A K+R
Sbjct: 391 AEALLMAVYEKHGLESPGGAP-PPEPDAPTKKR 422
>UniRef50_P81622 Cluster: Cold shock protein CspSt; n=6;
Streptococcus thermophilus|Rep: Cold shock protein CspSt
- Streptococcus thermophilus
Length = 21
Score = 33.9 bits (74), Expect = 3.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 183 SGTVKWFNVKSGYGFIXRND 242
+GTVKWFN + G+GFI D
Sbjct: 2 NGTVKWFNAEKGFGFITSED 21
>UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38;
Gammaproteobacteria|Rep: Cold shock-like protein cspC -
Shigella flexneri
Length = 69
Score = 33.9 bits (74), Expect = 3.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 177 KVSGTVKWFNVKSGYGFIXRNDTKED 254
K+ G VKWFN G+GFI D +D
Sbjct: 3 KIKGQVKWFNESKGFGFITPADGSKD 28
>UniRef50_P39158 Cluster: Cold shock protein cspC; n=41;
Bacteria|Rep: Cold shock protein cspC - Bacillus
subtilis
Length = 66
Score = 33.9 bits (74), Expect = 3.9
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFIXRND 242
GTVKWFN + G+GFI R +
Sbjct: 4 GTVKWFNAEKGFGFIEREN 22
>UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26;
cellular organisms|Rep: Cold shock-like protein cspC -
Bacillus anthracis
Length = 65
Score = 33.9 bits (74), Expect = 3.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 180 VSGTVKWFNVKSGYGFIXRND 242
+ G VKWFN + G+GFI R D
Sbjct: 1 MQGRVKWFNAEKGFGFIERED 21
>UniRef50_P72188 Cluster: Cold shock protein capA; n=23;
Proteobacteria|Rep: Cold shock protein capA -
Pseudomonas fragi
Length = 64
Score = 33.9 bits (74), Expect = 3.9
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 168 IAEKVSGTVKWFNVKSGYGFI 230
++++ SGTVKWFN + G+GFI
Sbjct: 1 MSQRQSGTVKWFNDEKGFGFI 21
>UniRef50_Q9I0L6 Cluster: Cold-shock protein CspD; n=12;
Gammaproteobacteria|Rep: Cold-shock protein CspD -
Pseudomonas aeruginosa
Length = 90
Score = 33.5 bits (73), Expect = 5.1
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +3
Query: 180 VSGTVKWFNVKSGYGFIXRNDTKED 254
+SG VKWFN GYGFI ED
Sbjct: 2 LSGKVKWFNNAKGYGFILAEGRDED 26
>UniRef50_Q2IPN0 Cluster: Putative uncharacterized protein
precursor; n=1; Anaeromyxobacter dehalogenans 2CP-C|Rep:
Putative uncharacterized protein precursor -
Anaeromyxobacter dehalogenans (strain 2CP-C)
Length = 760
Score = 33.5 bits (73), Expect = 5.1
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = -2
Query: 355 LPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHKQSSLVSFLXMKPYPLLTLNHFTVPD 182
LPG+ G L A R ++LT VTG+G +S+ V+ YP+ + FTVPD
Sbjct: 271 LPGSSGTLTETPDATRTYTLT--VTGEGGQTVARSATVTV-----YPVPVIRSFTVPD 321
>UniRef50_Q0YRJ0 Cluster: Cold-shock protein, DNA-binding; n=1;
Chlorobium ferrooxidans DSM 13031|Rep: Cold-shock
protein, DNA-binding - Chlorobium ferrooxidans DSM 13031
Length = 70
Score = 33.5 bits (73), Expect = 5.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 180 VSGTVKWFNVKSGYGFIXRNDTKED 254
V+G VKWF+V+ G+GFI + ED
Sbjct: 2 VNGKVKWFDVRKGFGFILNPNGGED 26
>UniRef50_A4U251 Cluster: Cold shock DNA-binding domain protein;
n=3; Magnetospirillum|Rep: Cold shock DNA-binding domain
protein - Magnetospirillum gryphiswaldense
Length = 209
Score = 33.5 bits (73), Expect = 5.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 165 VIAEKVSGTVKWFNVKSGYGFIXRNDTKED 254
V V+ TVKWFN G+GF+ +D D
Sbjct: 47 VTQTNVTATVKWFNASKGFGFVAPSDGTPD 76
>UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2;
Actinomycetales|Rep: Putative DNA-binding protein -
Streptomyces coelicolor
Length = 162
Score = 33.1 bits (72), Expect = 6.8
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +2
Query: 290 PRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGE 397
P ++VRS G VEF V +GE+G +A+G+ P GE
Sbjct: 57 PEESVRS---GLVVEFEVESGERGLKASGIRLPEGE 89
>UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44;
Bacteria|Rep: Cold shock-like protein - Acinetobacter
sp. (strain ADP1)
Length = 69
Score = 33.1 bits (72), Expect = 6.8
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 168 IAEKVSGTVKWFNVKSGYGFIXRN 239
++ V+GTVKWFN G+GFI ++
Sbjct: 1 MSNSVNGTVKWFNEVKGFGFIQQD 24
>UniRef50_Q4KIT8 Cluster: Membrane protein, putative; n=1;
Pseudomonas fluorescens Pf-5|Rep: Membrane protein,
putative - Pseudomonas fluorescens (strain Pf-5 / ATCC
BAA-477)
Length = 211
Score = 33.1 bits (72), Expect = 6.8
Identities = 23/64 (35%), Positives = 27/64 (42%)
Frame = +2
Query: 248 GRLFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAAD 427
G L H R AV G G VE AG GV+G G+P + AAD
Sbjct: 98 GVLHYHGRLCRAAGRRPAVHVAGAGRPVEHGSGAGPLWL--GGVSGSAGQPRQDCRIAAD 155
Query: 428 KRRG 439
+RRG
Sbjct: 156 RRRG 159
>UniRef50_Q48H64 Cluster: Cold shock domain protein CspD; n=7;
Proteobacteria|Rep: Cold shock domain protein CspD -
Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6)
Length = 94
Score = 33.1 bits (72), Expect = 6.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 180 VSGTVKWFNVKSGYGFIXRNDTKEDCL 260
++G VKWFN GYGFI ++ +D L
Sbjct: 4 LNGKVKWFNNAKGYGFIIKDGKPDDDL 30
>UniRef50_Q0SKK0 Cluster: Cold shock protein; n=20; Bacteria|Rep:
Cold shock protein - Rhodococcus sp. (strain RHA1)
Length = 119
Score = 33.1 bits (72), Expect = 6.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 183 SGTVKWFNVKSGYGFIXRNDTKED 254
+GTV+WFN + G+GF+ D +D
Sbjct: 55 TGTVRWFNAEQGFGFLAPADGSDD 78
>UniRef50_Q0M3I1 Cluster: Cold-shock protein, DNA-binding; n=1;
Caulobacter sp. K31|Rep: Cold-shock protein, DNA-binding
- Caulobacter sp. K31
Length = 201
Score = 33.1 bits (72), Expect = 6.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 177 KVSGTVKWFNVKSGYGFIXRND 242
++SG VKWF+ GYGFI +D
Sbjct: 17 RISGRVKWFDTGKGYGFIVPDD 38
>UniRef50_Q0BPU3 Cluster: Cold shock protein; n=1; Granulibacter
bethesdensis CGDNIH1|Rep: Cold shock protein -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 100
Score = 33.1 bits (72), Expect = 6.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFIXRNDTKED 254
GTVKWFN GYGFI + ++D
Sbjct: 35 GTVKWFNPTKGYGFIAPSTGEKD 57
>UniRef50_A7DA86 Cluster: Putative cold-shock DNA-binding domain
protein; n=3; Methylobacterium extorquens PA1|Rep:
Putative cold-shock DNA-binding domain protein -
Methylobacterium extorquens PA1
Length = 69
Score = 33.1 bits (72), Expect = 6.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 183 SGTVKWFNVKSGYGFIXRNDTKED 254
+GTVKWFN GYGFI ++ +D
Sbjct: 3 TGTVKWFNETKGYGFIQPDNGGKD 26
>UniRef50_A5V9E9 Cluster: Putative cold-shock DNA-binding domain
protein; n=1; Sphingomonas wittichii RW1|Rep: Putative
cold-shock DNA-binding domain protein - Sphingomonas
wittichii RW1
Length = 198
Score = 33.1 bits (72), Expect = 6.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 171 AEKVSGTVKWFNVKSGYGFIXRNDTKEDCL 260
AE V G VKWF+ G+GFI + + D L
Sbjct: 31 AETVVGAVKWFDATRGFGFIATDGDRGDVL 60
>UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein;
n=2; Marinomonas|Rep: Cold-shock DNA-binding domain
protein - Marinomonas sp. MED121
Length = 97
Score = 33.1 bits (72), Expect = 6.8
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 180 VSGTVKWFNVKSGYGFIXR 236
VSG VKWFN + G+GFI R
Sbjct: 33 VSGIVKWFNDEKGFGFIER 51
>UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein;
n=1; Ostreococcus tauri|Rep: Putative nucleic acid
binding protein - Ostreococcus tauri
Length = 125
Score = 33.1 bits (72), Expect = 6.8
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAV--RSVGDGEAVEFAVV---AGEKGFEAAGVTGPGGEPVKGSPY 418
+FVHQ+A+ R+ R G++VEF V ++ +A VTG GG P+K P
Sbjct: 36 VFVHQSALKMEGFRRTDGRRFATQGDSVEFDVEHESPTDERLKAVCVTGIGGAPLKAPPR 95
Query: 419 A----ADKRRGYHRQ 451
+ K+RG R+
Sbjct: 96 TNYRRSSKKRGPRRE 110
>UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1;
Ostreococcus tauri|Rep: Glycogen debranching enzyme -
Ostreococcus tauri
Length = 141
Score = 33.1 bits (72), Expect = 6.8
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKA--VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 415
+FVHQ+ + + R VR G+ +EF + E+ A VTGP G P+K +P
Sbjct: 65 VFVHQSELQMDGFRSVWEVRLQQAGDEIEFELDDDERR-RAKNVTGPAGAPLKKTP 119
>UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep:
Cold shock protein B - Streptomyces coelicolor
Length = 127
Score = 32.7 bits (71), Expect = 9.0
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 183 SGTVKWFNVKSGYGFIXRND 242
+G VKWFN + G+GF+ R+D
Sbjct: 3 TGKVKWFNSEKGFGFLSRDD 22
>UniRef50_Q89KY2 Cluster: Bll4766 protein; n=5;
Bradyrhizobiaceae|Rep: Bll4766 protein - Bradyrhizobium
japonicum
Length = 743
Score = 32.7 bits (71), Expect = 9.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 293 RKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 412
R R++GDG+ +G AG +G GGE V G+
Sbjct: 52 RTRARAIGDGDTARLRAPSGAPAGNGAGSSGSGGEAVAGN 91
>UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5;
Deinococci|Rep: Cold shock protein homolog - Thermus
thermophilus
Length = 73
Score = 32.7 bits (71), Expect = 9.0
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFIXR 236
G VKWFN + GYGFI R
Sbjct: 4 GRVKWFNAEKGYGFIER 20
>UniRef50_A7HXE8 Cluster: Putative cold-shock DNA-binding domain
protein; n=1; Parvibaculum lavamentivorans DS-1|Rep:
Putative cold-shock DNA-binding domain protein -
Parvibaculum lavamentivorans DS-1
Length = 199
Score = 32.7 bits (71), Expect = 9.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 168 IAEKVSGTVKWFNVKSGYGFIXRNDTKEDCL 260
++ +++G VKWF+ GYGFI + +D L
Sbjct: 34 VSFEITGVVKWFDAVKGYGFIIPENGGDDVL 64
>UniRef50_A4A3Y7 Cluster: Cold-shock domain family protein; n=1;
Congregibacter litoralis KT71|Rep: Cold-shock domain
family protein - Congregibacter litoralis KT71
Length = 189
Score = 32.7 bits (71), Expect = 9.0
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 186 GTVKWFNVKSGYGFIXRNDTKE 251
GTVKWFN G+GFI R + E
Sbjct: 126 GTVKWFNGTKGFGFIIRENGDE 147
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,811,091
Number of Sequences: 1657284
Number of extensions: 9324751
Number of successful extensions: 33523
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 32096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33508
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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