Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40582
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0158 - 1103461-1104186 42 5e-04
08_01_0202 - 1638978-1639571 40 0.002
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 30 1.5
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 30 2.0
09_04_0484 + 17990020-17990488,17990930-17991009,17991122-179915... 29 3.6
09_04_0483 + 17979566-17980019,17980242-17980321,17980431-179808... 29 3.6
04_04_1582 - 34590698-34591199,34593849-34594690 29 3.6
03_01_0483 + 3689155-3689814 29 4.7
03_01_0056 - 471338-471919,472013-472213 29 4.7
12_02_0031 - 12477787-12478413,12480182-12480268,12480371-124805... 28 6.2
11_06_0416 + 23307984-23308281,23310083-23310900 28 6.2
08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160 28 6.2
09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327... 28 8.3
08_01_0229 + 1834102-1834358,1834442-1834901 28 8.3
05_02_0119 + 6793292-6793613,6795793-6795952,6796416-6796458,679... 28 8.3
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 28 8.3
>02_01_0158 - 1103461-1104186
Length = 241
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVKG 409
LFVHQ++I + RS+ +GE VEFA+ E G +A VTGP G VKG
Sbjct: 32 LFVHQSSIKADG----FRSLAEGEQVEFAISESEDGRTKAVDVTGPDGSFVKG 80
Score = 35.5 bits (78), Expect = 0.041
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 171 AEKVSGTVKWFNVKSGYGFIXRNDTKED 254
A + GTVKWFN G+GFI +D ED
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDDGSED 31
>08_01_0202 - 1638978-1639571
Length = 197
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +2
Query: 254 LFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVK-GSPYAAD 427
LFVHQ+++ + RS+ DG+ VEF+V +G G +A VT PGG + GS +
Sbjct: 31 LFVHQSSLKSDG----YRSLNDGDVVEFSVGSGNDGRTKAVDVTAPGGGALTGGSRPSGG 86
Query: 428 KRRGY 442
RGY
Sbjct: 87 GDRGY 91
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +3
Query: 171 AEKVSGTVKWFNVKSGYGFIXRNDTKED 254
+E+V GTVKWF+ G+GFI +D ED
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGED 30
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 385 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHKQSSLVSFL 233
T N ++ FLP G + L + D ++ W ++ + SL HK S F+
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHKSMSPEDFV 341
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 320 GEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 409
GE+ E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>09_04_0484 +
17990020-17990488,17990930-17991009,17991122-17991586,
17994670-17994756,17994887-17995018,17995102-17995293,
17995409-17995495,17995621-17996295
Length = 728
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 533 LSGGQRRPILLCVELLHR-LVRHLDEGNIGGGSHGACLQHKVS 408
+SGGQRR + +C+E+L R + LDE G A H VS
Sbjct: 248 ISGGQRRRVSICMEILTRPALLFLDEPT--SGLDSAASYHVVS 288
>09_04_0483 +
17979566-17980019,17980242-17980321,17980431-17980895,
17981460-17981597,17982574-17982660,17982781-17982909,
17983034-17983225,17983393-17983479,17983707-17984378
Length = 767
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 533 LSGGQRRPILLCVELLHR-LVRHLDEGNIGGGSHGACLQHKVS 408
+SGGQRR + +C+E+L R + LDE G A H VS
Sbjct: 243 ISGGQRRRVSICMEILTRPALLFLDEPT--SGLDSAASYHVVS 283
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 314 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 436
GDG E + G+KG G G GG KGS ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269
>03_01_0483 + 3689155-3689814
Length = 219
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2
Query: 314 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 439
GDG A AG G +AA G G +PV+GS +D RG
Sbjct: 62 GDGGADPVRGSAG--GSDAARGDGGGADPVRGSAGGSDAARG 101
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 314 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 439
GDG + V G +AA G G +PV+GS +D RG
Sbjct: 81 GDGGGAD-PVRGSAGGSDAARGDGGGADPVRGSAGGSDAARG 121
>03_01_0056 - 471338-471919,472013-472213
Length = 260
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 690 LEIARTHSAEPSSIHWARTSPTASTAKI-ATEKTALRW 580
L+IA +A P+S SP+ +T ++ A +K A+RW
Sbjct: 199 LKIAGCEAAAPASCQPVPASPSGATGELSAQQKAAMRW 236
>12_02_0031 -
12477787-12478413,12480182-12480268,12480371-12480562,
12480638-12480766,12480840-12480926,12483076-12483537,
12485088-12485222
Length = 572
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 533 LSGGQRRPILLCVELLHR-LVRHLDEGNIG 447
+SGGQR+ + +CVE+L R + LDE G
Sbjct: 110 ISGGQRKRVSICVEMLTRPRLLFLDEPTSG 139
>11_06_0416 + 23307984-23308281,23310083-23310900
Length = 371
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 470 HLDEGNIGGGSHGACLQHKVSLLLAHH 390
HLD+ N+ G +G + K+SLL A H
Sbjct: 89 HLDDPNVDGVRNGVRARFKISLLAAAH 115
>08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160
Length = 749
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = +2
Query: 233 QE*HQGR--LFVHQTAIARNNPRKAVRSVGDGEA----VEFAVVAGEKGFEAAGVTGPGG 394
Q+ H G L HQ + P+ S DG A +E + G E+ G G GG
Sbjct: 17 QQHHNGHHLLDQHQQHQHQLPPQATTTSESDGRAPRDELEMSKSGGSDNLESGGGGGGGG 76
Query: 395 EPVKGSPYAADKRRGYHR 448
P +++ YHR
Sbjct: 77 SGGDQDPNQRPRKKRYHR 94
>09_02_0515 +
10121849-10122149,10132151-10132187,10132314-10132790,
10133184-10133733
Length = 454
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 180 VSGTVKWFNVKSGYGFIXRNDTKE 251
V+ VKW +KSG F N KE
Sbjct: 195 VAAAVKWLKIKSGQAFAVENYVKE 218
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 68 GVIGERRWWQRW 33
GV+GERR W+RW
Sbjct: 134 GVVGERRRWRRW 145
>05_02_0119 +
6793292-6793613,6795793-6795952,6796416-6796458,
6797015-6797335
Length = 281
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 359 GFEAAGVTGPGGEPVKGSPYAADKRRG 439
G EA G +GPGGE D RRG
Sbjct: 75 GVEAPGGSGPGGERTMAPANIDDSRRG 101
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +2
Query: 302 VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 415
VR G G A FAV G A G GGEP SP
Sbjct: 53 VRGGGGGGAALFAVPRLFVGLAAKRGAGDGGEPASRSP 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,866,483
Number of Sequences: 37544
Number of extensions: 291016
Number of successful extensions: 1156
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -