Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40581
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    46   3e-06
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    46   3e-06
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    31   0.083
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.34 
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    29   0.34 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   0.78 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   1.0  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    25   4.1  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    25   5.5  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   5.5  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         24   7.2  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   7.2  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    24   7.2  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    24   9.6  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    24   9.6  
SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ...    24   9.6  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    24   9.6  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 45.6 bits (103), Expect = 3e-06
 Identities = 19/46 (41%), Positives = 34/46 (73%)
 Frame = +2

Query: 128 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELGKK 265
           +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L ++
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66



 Score = 28.7 bits (61), Expect = 0.34
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 259 EKGLIKQVVQHHGQVIYTRA 318
           E+G+I++V QH  Q IYTRA
Sbjct: 65  ERGVIQKVDQHSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 45.6 bits (103), Expect = 3e-06
 Identities = 19/46 (41%), Positives = 34/46 (73%)
 Frame = +2

Query: 128 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELGKK 265
           +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L ++
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66



 Score = 27.1 bits (57), Expect = 1.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 259 EKGLIKQVVQHHGQVIYTR 315
           E+G+I++V QH  Q IYTR
Sbjct: 65  ERGVIQKVDQHSKQAIYTR 83


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 30.7 bits (66), Expect = 0.083
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = -3

Query: 279 LFDETFFPSSMSALLAREPRTFN--LSDTTAGVISLYCGTSLYSFSYVGLSNNT---WLF 115
           +F+  F+ S M+ +  +    FN  LSD    VIS   G + Y F  V LS+ T   W  
Sbjct: 198 VFNAHFYSSIMNEVAEKANAGFNISLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYR 257

Query: 114 NLSRTFPLDHF 82
           N +  +P+  F
Sbjct: 258 NANFPYPIITF 268


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 252 SMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFL 73
           S+SA        FNL+    GV ++  G S  +F+ + + +  W F +    P+D   FL
Sbjct: 139 SLSADTIGRRWAFNLTFLFTGVFAVIAGASP-NFASICVFDALWSFGVGGNLPVDSAIFL 197

Query: 72  -ALP 64
            ALP
Sbjct: 198 EALP 201


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 149 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 36
           +M  YQ TP     HE   WT SS  L  H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 0.78
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 156  SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 58
            SF Y  L NN++L  +S +   ++ F++  PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 30  KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 128
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -3

Query: 189 VISLYCGTSLYSFSYV-GLSNNTWLFNLSRTFPLDHFFFLALPPP 58
           V+ + C  +L  F ++ G+ N         T P  +F+ L  PPP
Sbjct: 37  VVVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 9   RLRPNSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPHMRN 155
           R  PNS+K+ +R  K P++     +S P+   +T   +R   +   +RN
Sbjct: 150 RTTPNSIKRQKRLFKSPISNCLNPKSDPE---ITQLLSRRLKLEKEVRN 195


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 350 IVYATGSSPLVARV*ITCP*CWTTCLMRP 264
           I+Y T ++P++  + +T   CW   L  P
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP 288


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 135 SNNTWLFNLSRTFPLDHFFFLAL 67
           S N+W+F L  TF     F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 77  SWLCRHRILPSSSVFFEAVW 18
           +WL +  ++PSSS F  + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 255  SSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT--WLFNLSRTFP 94
            S+ S  L+ EP+TF+ S T +  IS     SL       LS++T   L + S T P
Sbjct: 946  SASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTSSSSTIP 1001


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 143 TYEKLYKEVPQYKLITPAVVS 205
           TY+K+Y E P  K++   + S
Sbjct: 96  TYKKIYNEYPPTKILVQEIAS 116


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 285 DYLFDETFFPSSMSALLAREPRTFNLSDTTA 193
           D+L D T FP+  +  +   P  F  SD T+
Sbjct: 484 DHLNDFTSFPTETAVSIVHVPLMFPCSDQTS 514


>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
           Apc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 318 RTRVDHLPMMLDYLFDETFFPSSM 247
           R  + ++ M L Y  DE++ PS++
Sbjct: 72  RVSIKYVSMYLQYTLDESYTPSTL 95


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 294 MMLDYLFDETFFPSSMSALLAREPRTFNLSDTT 196
           ++LD  F++T FP+ ++ L  +  R   L +TT
Sbjct: 647 LLLDNKFNDTVFPTRLALLYLK--RILELEETT 677


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,573,188
Number of Sequences: 5004
Number of extensions: 31994
Number of successful extensions: 136
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)