Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40581
(386 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 70 6e-13
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 70 6e-13
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 56 1e-08
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 31 0.32
10_01_0146 - 1719997-1720386,1721498-1721515 28 3.0
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 27 3.9
05_03_0561 - 15476484-15476649,15476814-15476893,15476971-154770... 27 3.9
04_03_0916 + 20794240-20794246,20794585-20796545 27 3.9
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 27 5.2
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242... 27 6.9
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381... 27 6.9
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 27 6.9
05_04_0314 - 20133281-20133824,20133911-20134991,20135116-20135488 27 6.9
04_04_1699 + 35462160-35462555,35463114-35463196,35463317-354633... 27 6.9
02_03_0349 + 18010414-18014283 27 6.9
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 26 9.1
04_04_0176 - 23329589-23331043 26 9.1
02_05_0114 + 25958834-25961296 26 9.1
02_02_0060 + 6446317-6446871,6447836-6448276,6449035-6449265,644... 26 9.1
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 70.1 bits (164), Expect = 6e-13
Identities = 31/48 (64%), Positives = 41/48 (85%)
Frame = +2
Query: 113 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 256
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ +L
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDL 84
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 259 EKGLIKQVVQHHGQVIYTRAT 321
++GLI+ V H Q IYTRAT
Sbjct: 86 DRGLIRMVSVHCSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 70.1 bits (164), Expect = 6e-13
Identities = 31/48 (64%), Positives = 41/48 (85%)
Frame = +2
Query: 113 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 256
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ +L
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDL 84
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 262 KGLIKQVVQHHGQVIYTRAT 321
+GLI+ V H Q IYTRAT
Sbjct: 87 RGLIRMVSVHSSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 55.6 bits (128), Expect = 1e-08
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +2
Query: 113 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLK 217
+NN VLFDK TY+KL EVP+YK ITP+V+SERL+
Sbjct: 971 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 31.1 bits (67), Expect = 0.32
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 4 REGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPGV 129
R G G + + E G+ +WR+ +EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>10_01_0146 - 1719997-1720386,1721498-1721515
Length = 135
Score = 27.9 bits (59), Expect = 3.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 12 LRPNSLKKHRRRRKDPVAAKPRRRS 86
++P+ + RRRR +P +PRRR+
Sbjct: 81 MQPDDGGQRRRRRSEPATTQPRRRA 105
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 10 GFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPG 126
GFG S N+ +RWR + +++ Q Q ++PG
Sbjct: 427 GFGIAISANSMLVEYLRWRSRRNQQLAQTVDDGQRQEPG 465
>05_03_0561 -
15476484-15476649,15476814-15476893,15476971-15477030,
15477117-15477210,15477287-15477421,15477601-15477656,
15478359-15478460,15478544-15478651,15479206-15479283,
15479432-15479521,15480061-15480123
Length = 343
Score = 27.5 bits (58), Expect = 3.9
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = -3
Query: 348 SLCDWI-----IALGRTRVDHLPMMLDYLFDETFFPSSMSALLAREPRTFNLSDTTA 193
S+C+W IA G+ V+H + F+E +F SS R R F + TTA
Sbjct: 266 SVCEWFKDYQPIAPGKQEVEHAYEFVKKKFEELYFQSSKP---DRVDRVFKIYRTTA 319
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 203 IRQQV*LACTVGLPCTVSH-MWVYQTTPGCSTCHELFLWTTSSSWLCRHRI 54
I Q + L +G C + VY+ P S H+LF T+ +W R+ I
Sbjct: 399 IIQHINLVKLIGFCCEGGRRLLVYEHMPNRSLDHQLFQTNTTLTWNIRYEI 449
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -3
Query: 216 FNLSDTTAGVISLYCGTSLYSFSYVGL--SNNTWLFNLSRTFPLDHFFFL 73
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 843 FFVAQLIATLIAVYANWAFTSIKGIGWGWAGIVWLYNLVFYFPLDIIKFL 892
>12_02_1263 +
27423411-27423464,27423985-27424104,27424200-27424298,
27424405-27424542,27424647-27424706,27424865-27425044,
27425132-27425338,27425415-27425534,27425609-27425728,
27425819-27425941,27426074-27426178,27426379-27426523,
27426967-27427131,27427228-27427466,27427553-27427585,
27427894-27427975,27428100-27428260,27428422-27428607,
27428700-27428882,27428969-27429147,27429386-27429482
Length = 931
Score = 26.6 bits (56), Expect = 6.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -3
Query: 216 FNLSDTTAGVISLYCGTSLYSFSYVGL--SNNTWLFNLSRTFPLDHFFFL 73
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 774 FLVAQLIATLIAVYADWAFTSIKGIGWGWAGIVWLYNLIFYFPLDIIKFL 823
>12_01_1073 +
11135853-11137388,11137627-11137846,11137990-11138178,
11138257-11138457,11138547-11139246,11163479-11164106
Length = 1157
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 208 KIKGPRFPGEKSTHRAREKGLIKQVVQHH 294
KI+G P K HRAR+ G K V H
Sbjct: 102 KIRGLNPPRNKQAHRARQDGHRKSVDSSH 130
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 360 NLYHSLCDWIIALGRTRVDHLPMMLDYLF 274
NL+H++ DW A +RV LP + +F
Sbjct: 347 NLFHTITDWYSAYVSSRVTDLPNRPNVVF 375
>05_04_0314 - 20133281-20133824,20133911-20134991,20135116-20135488
Length = 665
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 287 WTTCLMRPFSLAR*VLFSPGNLGPLIFQ 204
W C+ SLA +FSP N G + F+
Sbjct: 274 WMPCIAHTLSLALKDVFSPNNTGDVAFK 301
>04_04_1699 +
35462160-35462555,35463114-35463196,35463317-35463378,
35463745-35463806,35463932-35463991,35464079-35464111,
35464196-35464261,35464349-35464393
Length = 268
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 6 RRLRPNSLKKHRRRRKDPVAAKPRRRSGP 92
R+ P KHRR R D A PR+R P
Sbjct: 31 RQRPPPGPTKHRRLRHDADAQPPRKRGHP 59
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 137 KPTYEKLYKEVPQYKLITPAVVSERL 214
KPT E+L K +PQ K++ AV E +
Sbjct: 39 KPTRERLEKLLPQIKVVLDAVDMEHI 64
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 176 TVGLPCTVSHMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPS 45
T PC++S M V C TC+++ S +CR ++PS
Sbjct: 264 TCATPCSLSFM-VDCLIKACITCYDVQATICLFSGICRLGVVPS 306
>04_04_0176 - 23329589-23331043
Length = 484
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 1 GREGFGQTASKNTEEEGRIRWRQSQEEEVVQR 96
GR+GF + EE GR R R +EE +R
Sbjct: 405 GRDGFDLSRKHGHEERGRYRPRVLEEEREHER 436
>02_05_0114 + 25958834-25961296
Length = 820
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 176 TVGLPCTVSHMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPS 45
T PC++S M V C TC+++ S +CR ++PS
Sbjct: 146 TCATPCSLSFM-VDCLIKACITCYDVQATICLFSGICRLGVVPS 188
>02_02_0060 +
6446317-6446871,6447836-6448276,6449035-6449265,
6449382-6449473,6449555-6449615,6451541-6451618,
6451853-6452014
Length = 539
Score = 26.2 bits (55), Expect = 9.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 334 DHRPWSHACRSPAHDVGL 281
DH+P H+ RS H++G+
Sbjct: 431 DHKPMGHSARSLIHNIGV 448
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,643,909
Number of Sequences: 37544
Number of extensions: 221323
Number of successful extensions: 694
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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