Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40580
(699 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ101026-1|AAZ09032.1| 107|Homo sapiens immunoglobulin kappa li... 31 5.2
DQ100616-1|AAZ08623.1| 103|Homo sapiens immunoglobulin kappa li... 31 5.2
BC073938-1|AAH73938.1| 366|Homo sapiens RBBP6 protein protein. 31 5.2
BC063524-1|AAH63524.1| 919|Homo sapiens RBBP6 protein protein. 31 5.2
AL359564-1|CAB94869.1| 529|Homo sapiens hypothetical protein pr... 31 5.2
AK026954-1|BAB15600.1| 628|Homo sapiens protein ( Homo sapiens ... 31 5.2
AF352051-1|AAL05625.1| 1616|Homo sapiens proliferation potential... 31 5.2
AB112075-1|BAC77637.1| 1758|Homo sapiens retinoblastoma binding ... 31 5.2
AB112074-1|BAC77636.1| 1792|Homo sapiens retinoblastoma binding ... 31 5.2
BC113387-1|AAI13388.1| 248|Homo sapiens family with sequence si... 30 9.1
BC113385-1|AAI13386.1| 248|Homo sapiens family with sequence si... 30 9.1
AL009173-2|CAI42611.1| 248|Homo sapiens novel protein protein. 30 9.1
AK094978-1|BAC04467.1| 248|Homo sapiens protein ( Homo sapiens ... 30 9.1
>DQ101026-1|AAZ09032.1| 107|Homo sapiens immunoglobulin kappa light
chain variable region protein.
Length = 107
Score = 30.7 bits (66), Expect = 5.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 576 THITTMLKLIKSKRFIIYLCLDFSSSCWIF 487
TH T + ++ + F +Y C F SS W F
Sbjct: 69 THFTLTISRLEPEDFAVYFCQQFGSSPWTF 98
>DQ100616-1|AAZ08623.1| 103|Homo sapiens immunoglobulin kappa light
chain variable region protein.
Length = 103
Score = 30.7 bits (66), Expect = 5.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 576 THITTMLKLIKSKRFIIYLCLDFSSSCWIF 487
TH T + ++ + F +Y C F SS W F
Sbjct: 65 THFTLTISRLEPEDFAVYFCQQFGSSPWTF 94
>BC073938-1|AAH73938.1| 366|Homo sapiens RBBP6 protein protein.
Length = 366
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +1
Query: 40 DRQEKKSDPKVSHHERKKSTL----DEAHFEPDYD 132
D+ K P++SH R S L DEA FEPDY+
Sbjct: 182 DKSTVKPKPQLSHSSRLSSDLTRETDEAAFEPDYN 216
>BC063524-1|AAH63524.1| 919|Homo sapiens RBBP6 protein protein.
Length = 919
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +1
Query: 40 DRQEKKSDPKVSHHERKKSTL----DEAHFEPDYD 132
D+ K P++SH R S L DEA FEPDY+
Sbjct: 768 DKSTVKPKPQLSHSSRLSSDLTRETDEAAFEPDYN 802
>AL359564-1|CAB94869.1| 529|Homo sapiens hypothetical protein
protein.
Length = 529
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +1
Query: 40 DRQEKKSDPKVSHHERKKSTL----DEAHFEPDYD 132
D+ K P++SH R S L DEA FEPDY+
Sbjct: 345 DKSTVKPKPQLSHSSRLSSDLTRETDEAAFEPDYN 379
>AK026954-1|BAB15600.1| 628|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23301 fis, clone HEP11120. ).
Length = 628
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +1
Query: 40 DRQEKKSDPKVSHHERKKSTL----DEAHFEPDYD 132
D+ K P++SH R S L DEA FEPDY+
Sbjct: 444 DKSTVKPKPQLSHSSRLSSDLTRETDEAAFEPDYN 478
>AF352051-1|AAL05625.1| 1616|Homo sapiens proliferation
potential-related protein protein.
Length = 1616
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +1
Query: 40 DRQEKKSDPKVSHHERKKSTL----DEAHFEPDYD 132
D+ K P++SH R S L DEA FEPDY+
Sbjct: 1432 DKSTVKPKPQLSHSSRLSSDLTRETDEAAFEPDYN 1466
>AB112075-1|BAC77637.1| 1758|Homo sapiens retinoblastoma binding
protein 6 isoform 2 protein.
Length = 1758
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +1
Query: 40 DRQEKKSDPKVSHHERKKSTL----DEAHFEPDYD 132
D+ K P++SH R S L DEA FEPDY+
Sbjct: 1574 DKSTVKPKPQLSHSSRLSSDLTRETDEAAFEPDYN 1608
>AB112074-1|BAC77636.1| 1792|Homo sapiens retinoblastoma binding
protein 6 isoform 1 protein.
Length = 1792
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +1
Query: 40 DRQEKKSDPKVSHHERKKSTL----DEAHFEPDYD 132
D+ K P++SH R S L DEA FEPDY+
Sbjct: 1608 DKSTVKPKPQLSHSSRLSSDLTRETDEAAFEPDYN 1642
>BC113387-1|AAI13388.1| 248|Homo sapiens family with sequence
similarity 133, member A protein.
Length = 248
Score = 29.9 bits (64), Expect = 9.1
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 1 EKRENIEKGVESRDRQEKKSDPKVSHHERKKSTLDE 108
E +E+++K +S+D EK+ D + +RKKS D+
Sbjct: 152 ESKESVKKKKKSKDETEKEKDVRSLSKKRKKSYPDD 187
>BC113385-1|AAI13386.1| 248|Homo sapiens family with sequence
similarity 133, member A protein.
Length = 248
Score = 29.9 bits (64), Expect = 9.1
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 1 EKRENIEKGVESRDRQEKKSDPKVSHHERKKSTLDE 108
E +E+++K +S+D EK+ D + +RKKS D+
Sbjct: 152 ESKESVKKKKKSKDETEKEKDVRSLSKKRKKSYPDD 187
>AL009173-2|CAI42611.1| 248|Homo sapiens novel protein protein.
Length = 248
Score = 29.9 bits (64), Expect = 9.1
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 1 EKRENIEKGVESRDRQEKKSDPKVSHHERKKSTLDE 108
E +E+++K +S+D EK+ D + +RKKS D+
Sbjct: 152 ESKESVKKKKKSKDETEKEKDVRSLSKKRKKSYPDD 187
>AK094978-1|BAC04467.1| 248|Homo sapiens protein ( Homo sapiens
cDNA FLJ37659 fis, clone BRHIP2010610, weakly similar to
GAR2 PROTEIN. ).
Length = 248
Score = 29.9 bits (64), Expect = 9.1
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 1 EKRENIEKGVESRDRQEKKSDPKVSHHERKKSTLDE 108
E +E+++K +S+D EK+ D + +RKKS D+
Sbjct: 152 ESKESVKKKKKSKDETEKEKDVRSLSKKRKKSYPDD 187
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,323,870
Number of Sequences: 237096
Number of extensions: 912977
Number of successful extensions: 2079
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2075
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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