Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40574
         (424 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   1.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   8.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   8.6  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 304 LLELERDRVSSSYLAVILRL 245
           LLELER+  S+ YL+ + R+
Sbjct: 129 LLELEREFASNMYLSRLRRI 148


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 346 KPRLKNPLKHLLVTAKSLR 402
           KP +K PL   ++  K +R
Sbjct: 476 KPHIKKPLNAFMLYMKEMR 494


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 346 KPRLKNPLKHLLVTAKSLR 402
           KP +K PL   ++  K +R
Sbjct: 368 KPHIKKPLNAFMLYMKEMR 386


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,097
Number of Sequences: 336
Number of extensions: 1330
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9384961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)