Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40574
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   2.8  
SPBC1709.09 |||mitochondrial translation termination factor|Schi...    25   4.8  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.4  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   6.4  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 169 ATFLKEADEHF-EKAIEEHKKVSGSDVISRSQPNTNLTHGPAQV 297
           + F +E  E + E+       VS +DV+S S P    +H P  V
Sbjct: 547 SVFSEEVQEDYDERQFTGEAAVSANDVLSSSSPRHFSSHTPVNV 590


>SPBC1709.09 |||mitochondrial translation termination
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -1

Query: 379 EDVSVDFLVSVLMSFNVMLSSFDVVLLELERDRVSSSYL-AVILRLHQNHSPSYVLR*LS 203
           +DV  D       SFN ML SF+   ++L  ++++  +  AV+L    N +    L   S
Sbjct: 41  KDVKHDHDPEFANSFNKMLKSFE-AKMQLVHEKLAKRFQEAVVLPSQGNFTQLEALFIPS 99

Query: 202 QSVHRP-PSR 176
           +S+  P PSR
Sbjct: 100 KSIKAPTPSR 109


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 22/76 (28%), Positives = 32/76 (42%)
 Frame = +1

Query: 178 LKEADEHFEKAIEEHKKVSGSDVISRSQPNTNLTHGPAQVQAKRHQKKKALR*KTLKPRL 357
           L  A+E   K  + H   S S VIS + P  N T      Q +   K+K +        L
Sbjct: 161 LLNAEETPIKTGDLHS-TSASSVISCTPPAINFTSDICNEQIELEYKRKPIPDYDFMKGL 219

Query: 358 KNPLKHLLVTAKSLRR 405
           +  L+ L V  +S +R
Sbjct: 220 ETTLQELYVEHQSKKR 235


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 337  FNVMLSSFDVVLLELERDRVSSSYLAVILRLHQNHSPS 224
            F+ + ++FDV LLE ++   +S+ L + +  H  +S S
Sbjct: 1592 FSFLKANFDVALLE-QKQTETSNLLRLAMGFHNQNSSS 1628


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,353,816
Number of Sequences: 5004
Number of extensions: 21731
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)