Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40574
         (424 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0127 - 6872780-6872835,6872943-6873026,6873501-6873784,687...    29   1.2  
04_03_0471 - 16292916-16293209,16294558-16294803,16297557-162976...    28   3.6  
05_03_0250 + 10955281-10955419,10955524-10955727,10955985-109560...    27   8.2  

>05_02_0127 -
           6872780-6872835,6872943-6873026,6873501-6873784,
           6874403-6874568,6876724-6876906,6877400-6877505,
           6877620-6877775,6878882-6878899
          Length = 350

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 178 LKEADEHFEKAIEEHKKVSGSDVISRSQPNTNLTHGPA-QVQAKRHQKKKALR 333
           +KE  +  E   + H  V G D I   QPNT+   G +  + A  +  K+  R
Sbjct: 1   MKEGSQDVESKAKVHPLVQGDDEIKGEQPNTDAPLGDSDSLSAASNDNKRVSR 53


>04_03_0471 -
           16292916-16293209,16294558-16294803,16297557-16297692,
           16297765-16297983,16298194-16298572,16298967-16299225,
           16300044-16300114,16300604-16300625
          Length = 541

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 316 FDVVLLELERDRVSSSYLAVILRLHQNHSPSY 221
           + V   + E  ++S  YL  +  LHQNH PS+
Sbjct: 354 YKVAYAKKEFQKLSHYYLQEVEWLHQNHKPSF 385


>05_03_0250 +
           10955281-10955419,10955524-10955727,10955985-10956065,
           10956147-10956287,10956378-10956410,10956809-10956909,
           10957282-10957912,10959378-10959514
          Length = 488

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 202 EKAIEEHKKVSGSDVISRSQPNTNLTHGPAQVQAKRHQKKKA 327
           E+   +   +S   V  R  PN N+ H P   Q ++H    A
Sbjct: 141 ERLYADTLSLSSRSVRRRKIPNDNIVHQPHHTQLRQHNPTSA 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,413,306
Number of Sequences: 37544
Number of extensions: 128372
Number of successful extensions: 283
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)