Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40573
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354...    30   2.5  
04_03_0990 - 21481459-21481933,21482140-21482771                       28   9.9  

>09_06_0187 +
           21433842-21433887,21434504-21435246,21435437-21435484,
           21435929-21436814,21436967-21437056,21437543-21438417
          Length = 895

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 178 FISRMNPYSPELNYFLSYQYCR 243
           FI R+  +SP++ YF SY+Y R
Sbjct: 190 FIGRLPEWSPDVRYFTSYEYPR 211


>04_03_0990 - 21481459-21481933,21482140-21482771
          Length = 368

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 607 VLRLPVEGRSFERDAAISHDVFRPGIPTMSGGACGAVLP 491
           V+R+ ++    +   A+ H ++   +P M GG   A+LP
Sbjct: 236 VVRVNIDAMKVQDFEALLHYMYTDSLPEMKGGEAAAMLP 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,825,582
Number of Sequences: 37544
Number of extensions: 446913
Number of successful extensions: 1176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)