Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40569
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    28   1.8  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   4.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.4  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    25   9.4  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   9.4  

>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 302 IKKKYYQCYCCVPWSRVGSLNSSELHLYTYIQKIVLCCSWYTTPNLV 162
           I+  +Y     VP      L  S LH++ +I+ ++ C S +   NL+
Sbjct: 67  IRSWFYIALHAVPGFLARGLGLSRLHVFYFIRGVLACFSAFCETNLI 113


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 651 KLPIGNLPYINLLYVVCLSFIGTPNPTNNMKF 556
           KLP   +P ++ L  +C       NP+ N +F
Sbjct: 823 KLPRNQIPELDYLTQICFELFERTNPSGNKEF 854


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 33  FTGS*IIKILLSNLF*IIGNISLGFA--FITTTTRILLAAFCFGVNKIWCGVPRAAKYYF 206
           FT    IK    N   ++  IS+G +  F+   +RI+    CF +N I+ G+P   K   
Sbjct: 247 FTAWTWIKPCFFNFVILLKRISIGDSQLFLHLHSRIVQTLCCFSLNFIYHGLPICEKSKH 306

Query: 207 LYVS 218
           + +S
Sbjct: 307 ILMS 310


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -2

Query: 182 YTTPNLVHTKTKCSQQNSSRGRDKRET**NVANNSK*IR*QNFNYLTTSESNCMI 18
           YT+PNL+     C +  S   R+ ++   +  +N + I  Q F   ++S S  ++
Sbjct: 181 YTSPNLLRVNAPCRKSLSEMLRELKDIEDDYGSNEEKIL-QEFESFSSSSSESLV 234


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -3

Query: 562 EIHTHKKYIIILNLALVGL 506
           E+H+H  Y++ LN A++G+
Sbjct: 559 ELHSHGTYLVYLNGAILGI 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,191
Number of Sequences: 5004
Number of extensions: 68659
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)