Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40569
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121           31   1.4  
08_02_0854 - 21905054-21906308,21906396-21907300                       31   1.4  
01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990     31   1.4  
04_03_0664 + 18501248-18502802,18503370-18505054                       28   9.7  

>09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121
          Length = 798

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 628 WKISYR*FLPYIDLIHYSLNKDTFYCVHVYIF 723
           W+   + +    D + YS++KD  YC++ YIF
Sbjct: 87  WRSFQKTWFNEFDWLEYSVSKDAAYCLYCYIF 118


>08_02_0854 - 21905054-21906308,21906396-21907300
          Length = 719

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 628 WKISYR*FLPYIDLIHYSLNKDTFYCVHVYIF 723
           W+   + +    D + YS++KD  YC++ YIF
Sbjct: 87  WRSFQKTWFNEFDWLEYSVSKDAAYCLYCYIF 118


>01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990
          Length = 798

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 628 WKISYR*FLPYIDLIHYSLNKDTFYCVHVYIF 723
           W+   + +    D + YS++KD  YC++ YIF
Sbjct: 87  WRSFQKTWFNEFDWLEYSVSKDAAYCLYCYIF 118


>04_03_0664 + 18501248-18502802,18503370-18505054
          Length = 1079

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 657 WKKLP-IGNLPYINLLYVVCLSFI 589
           W+ LP +G LP +  LY++CL+ +
Sbjct: 635 WQHLPPLGELPSLKYLYLICLNSV 658


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,048,082
Number of Sequences: 37544
Number of extensions: 352338
Number of successful extensions: 622
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)