Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40569
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    26   0.35 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    26   0.35 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    26   0.35 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    26   0.35 
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              26   0.46 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   7.5  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -1

Query: 666 INVWKKLPIGNLPYINLLYVVCLSFIGTPNPTNNMKF 556
           +NVW  + +  + Y +LL  VC++++G   P +N+ +
Sbjct: 363 MNVWDGVCMCFI-YASLLEFVCVNYVGRKRPMHNVVY 398


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -1

Query: 666 INVWKKLPIGNLPYINLLYVVCLSFIGTPNPTNNMKF 556
           +NVW  + +  + Y +LL  VC++++G   P +N+ +
Sbjct: 332 MNVWDGVCMCFI-YASLLEFVCVNYVGRKRPMHNVVY 367


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -1

Query: 666 INVWKKLPIGNLPYINLLYVVCLSFIGTPNPTNNMKF 556
           +NVW  + +  + Y +LL  VC++++G   P +N+ +
Sbjct: 383 MNVWDGVCMCFI-YASLLEFVCVNYVGRKRPMHNVVY 418


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -1

Query: 666 INVWKKLPIGNLPYINLLYVVCLSFIGTPNPTNNMKF 556
           +NVW  + +  + Y +LL  VC++++G   P +N+ +
Sbjct: 332 MNVWDGVCMCFI-YASLLEFVCVNYVGRKRPMHNVVY 367


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 287 YQCYCCVPWSRVGSLNSSELHLY 219
           Y C+    W + G +N SEL  Y
Sbjct: 68  YGCFLACIWQQTGVMNGSELSTY 90


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -2

Query: 296 KKYYQCYCCVPWSRVGSLNSSELHLYTYIQK 204
           ++++ CYC V + R    N   +  Y  + K
Sbjct: 424 QQFFHCYCPVRFGRKADPNGDYIRRYLPVLK 454


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 733 VINEKYKRAHSKTYPYLNYNVL 668
           VI E  +R HS   P L+Y+ +
Sbjct: 51  VIGEPCQRVHSSRIPDLSYDFI 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,105
Number of Sequences: 438
Number of extensions: 5137
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)