Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40568
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    29   0.83 
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    27   4.4  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   5.8  

>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -3

Query: 325  KKSALQRPNEERS*NPNKLNKANYTTTVYKFCANFEVFKEHDITN-THVAQIFCRVKIQQ 149
            K SA   P  ER+   +K+ K++   T Y  C N       D+     +   +C +    
Sbjct: 1445 KVSAYVGPPAERAKIRSKMKKSDVVVTSYDICRN-------DVDELVKIDWNYCVLDEGH 1497

Query: 148  *IKNAIAQLTGKVKSL 101
             IKNA A+LT  VKSL
Sbjct: 1498 VIKNARAKLTKAVKSL 1513


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 267 TRPIILPLSTNFVRTLKFSKNMISPIHM 184
           T P+ LPL TNFV + + + N +  ++M
Sbjct: 56  TVPLRLPLYTNFVNSFRPNINQLKAVYM 83


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 261 PIILPLSTNFVRTLKFSKNMI 199
           P++LPL T   RTL F KNM+
Sbjct: 562 PVLLPLITRLKRTL-FGKNML 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,646
Number of Sequences: 5004
Number of extensions: 69752
Number of successful extensions: 176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)