Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40568
         (846 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29863-1|AAA35820.1|  346|Homo sapiens protein ( Human farnesyl ...    31   5.3  
J05262-1|AAA52423.1|  353|Homo sapiens FDPS protein.                   31   5.3  
D14697-1|BAA03523.2|  420|Homo sapiens KIAA1293 protein.               31   5.3  
BC010004-1|AAH10004.1|  419|Homo sapiens farnesyl diphosphate sy...    31   5.3  
AL139410-1|CAI12715.1|  419|Homo sapiens farnesyl diphosphate sy...    31   5.3  
AB018551-1|BAA76711.1|  438|Homo sapiens coiled-coil protein pro...    30   9.2  

>M29863-1|AAA35820.1|  346|Homo sapiens protein ( Human farnesyl
           pyrophosphate synthetase mRNA (hpt807), 3' end. ).
          Length = 346

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 511 YRLVALVCREHPH*INLIHLML 576
           YRL+ L CRE P+ +NLI L L
Sbjct: 133 YRLLKLYCREQPYYLNLIELFL 154


>J05262-1|AAA52423.1|  353|Homo sapiens FDPS protein.
          Length = 353

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 511 YRLVALVCREHPH*INLIHLML 576
           YRL+ L CRE P+ +NLI L L
Sbjct: 140 YRLLKLYCREQPYYLNLIELFL 161


>D14697-1|BAA03523.2|  420|Homo sapiens KIAA1293 protein.
          Length = 420

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 511 YRLVALVCREHPH*INLIHLML 576
           YRL+ L CRE P+ +NLI L L
Sbjct: 207 YRLLKLYCREQPYYLNLIELFL 228


>BC010004-1|AAH10004.1|  419|Homo sapiens farnesyl diphosphate
           synthase (farnesyl pyrophosphate synthetase,
           dimethylallyl protein.
          Length = 419

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 511 YRLVALVCREHPH*INLIHLML 576
           YRL+ L CRE P+ +NLI L L
Sbjct: 206 YRLLKLYCREQPYYLNLIELFL 227


>AL139410-1|CAI12715.1|  419|Homo sapiens farnesyl diphosphate
           synthase (farnesyl pyrophosphate synthetase,
           dimethylallyl protein.
          Length = 419

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 511 YRLVALVCREHPH*INLIHLML 576
           YRL+ L CRE P+ +NLI L L
Sbjct: 206 YRLLKLYCREQPYYLNLIELFL 227


>AB018551-1|BAA76711.1|  438|Homo sapiens coiled-coil protein
           protein.
          Length = 438

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 448 LRAAYEGQTATLS-SIAMR*LLNKLNFNYAELLIHDLILASTKKSALQRPNEER 290
           L+AAYE + A L  S AM+     L  +    ++ +L++A  ++  LQR  EER
Sbjct: 190 LKAAYEARMARLDPSQAMQ--KTSLTLSLQRQMMENLVIAKAREETLQRKMEER 241


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,752,466
Number of Sequences: 237096
Number of extensions: 2213948
Number of successful extensions: 3702
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3701
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10705443456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)