Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40567
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 145 6e-36
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 145 6e-36
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 145 6e-36
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 99 9e-22
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 90 4e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 70 5e-13
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 32 0.11
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 28 1.4
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 3.2
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 27 4.2
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 27 4.2
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 27 4.2
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 4.2
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 4.2
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 26 7.4
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 7.4
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 145 bits (352), Expect = 6e-36
Identities = 61/86 (70%), Positives = 73/86 (84%)
Frame = +2
Query: 254 LKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILP 433
+KK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+I P
Sbjct: 176 IKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEP 235
Query: 434 PARPTDKPLRLPLQDVYKIGGIGTVP 511
PARPTDKPLRLPLQDVYKIGGIGTVP
Sbjct: 236 PARPTDKPLRLPLQDVYKIGGIGTVP 261
Score = 142 bits (345), Expect = 4e-35
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +1
Query: 511 VGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 690
VGRVETGV+KPG IV FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG
Sbjct: 262 VGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRG 321
Query: 691 YVAGDSKNNPPKGAADFTAQVIVL 762
V GDSKN+PP G A FTAQVI+L
Sbjct: 322 NVCGDSKNDPPMGCASFTAQVIIL 345
Score = 139 bits (336), Expect = 5e-34
Identities = 66/88 (75%), Positives = 78/88 (88%)
Frame = +3
Query: 3 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 182
GHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VN
Sbjct: 94 GHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVN 153
Query: 183 KMDSTEPPYSEPRFEEIKKEVSSYSRRL 266
KMD+T +S+ RFEEI KE S++ +++
Sbjct: 154 KMDTT--GWSQARFEEIVKETSNFIKKV 179
Score = 45.6 bits (103), Expect = 8e-06
Identities = 20/40 (50%), Positives = 23/40 (57%)
Frame = +3
Query: 696 CW*LQKQPT*GCCRFYSSSHCAYHPGQISNGYTPVLDCHT 815
C + P GC F + HPGQIS GY+PVLDCHT
Sbjct: 324 CGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHT 363
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 145 bits (352), Expect = 6e-36
Identities = 61/86 (70%), Positives = 73/86 (84%)
Frame = +2
Query: 254 LKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILP 433
+KK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+I P
Sbjct: 176 IKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEP 235
Query: 434 PARPTDKPLRLPLQDVYKIGGIGTVP 511
PARPTDKPLRLPLQDVYKIGGIGTVP
Sbjct: 236 PARPTDKPLRLPLQDVYKIGGIGTVP 261
Score = 142 bits (345), Expect = 4e-35
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +1
Query: 511 VGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 690
VGRVETGV+KPG IV FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG
Sbjct: 262 VGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRG 321
Query: 691 YVAGDSKNNPPKGAADFTAQVIVL 762
V GDSKN+PP G A FTAQVI+L
Sbjct: 322 NVCGDSKNDPPMGCASFTAQVIIL 345
Score = 139 bits (337), Expect = 4e-34
Identities = 67/88 (76%), Positives = 78/88 (88%)
Frame = +3
Query: 3 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 182
GHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VN
Sbjct: 94 GHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVN 153
Query: 183 KMDSTEPPYSEPRFEEIKKEVSSYSRRL 266
KMD+T +S+ RFEEI KE S++ +++
Sbjct: 154 KMDTT--GWSQARFEEIVKETSNFIKKV 179
Score = 45.6 bits (103), Expect = 8e-06
Identities = 20/40 (50%), Positives = 23/40 (57%)
Frame = +3
Query: 696 CW*LQKQPT*GCCRFYSSSHCAYHPGQISNGYTPVLDCHT 815
C + P GC F + HPGQIS GY+PVLDCHT
Sbjct: 324 CGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHT 363
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 145 bits (352), Expect = 6e-36
Identities = 61/86 (70%), Positives = 73/86 (84%)
Frame = +2
Query: 254 LKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILP 433
+KK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+I P
Sbjct: 176 IKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEP 235
Query: 434 PARPTDKPLRLPLQDVYKIGGIGTVP 511
PARPTDKPLRLPLQDVYKIGGIGTVP
Sbjct: 236 PARPTDKPLRLPLQDVYKIGGIGTVP 261
Score = 142 bits (345), Expect = 4e-35
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +1
Query: 511 VGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 690
VGRVETGV+KPG IV FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVK++RRG
Sbjct: 262 VGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRG 321
Query: 691 YVAGDSKNNPPKGAADFTAQVIVL 762
V GDSKN+PP G A FTAQVI+L
Sbjct: 322 NVCGDSKNDPPMGCASFTAQVIIL 345
Score = 139 bits (336), Expect = 5e-34
Identities = 66/88 (75%), Positives = 78/88 (88%)
Frame = +3
Query: 3 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 182
GHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VN
Sbjct: 94 GHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVN 153
Query: 183 KMDSTEPPYSEPRFEEIKKEVSSYSRRL 266
KMD+T +S+ RFEEI KE S++ +++
Sbjct: 154 KMDTT--GWSQARFEEIVKETSNFIKKV 179
Score = 45.6 bits (103), Expect = 8e-06
Identities = 20/40 (50%), Positives = 23/40 (57%)
Frame = +3
Query: 696 CW*LQKQPT*GCCRFYSSSHCAYHPGQISNGYTPVLDCHT 815
C + P GC F + HPGQIS GY+PVLDCHT
Sbjct: 324 CGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHT 363
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 98.7 bits (235), Expect = 9e-22
Identities = 44/89 (49%), Positives = 62/89 (69%)
Frame = +3
Query: 3 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 182
GH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+LA T G+ L+V +N
Sbjct: 325 GHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN 384
Query: 183 KMDSTEPPYSEPRFEEIKKEVSSYSRRLA 269
KMD +SE R++E ++S + RR+A
Sbjct: 385 KMDEPSVQWSEERYKECVDKLSMFLRRVA 413
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 89.8 bits (213), Expect = 4e-19
Identities = 44/84 (52%), Positives = 55/84 (65%)
Frame = +3
Query: 3 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 182
GHRDFI MI G S AD AVL+V + FE G +NGQTREHA L LG+ +++V VN
Sbjct: 264 GHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVN 323
Query: 183 KMDSTEPPYSEPRFEEIKKEVSSY 254
K+D +SE RF+EIK VS +
Sbjct: 324 KLDLMS--WSEDRFQEIKNIVSDF 345
Score = 52.0 bits (119), Expect = 1e-07
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +2
Query: 242 SILILKKIGYNPAAVAFVPISGWHGDNMLEPSTK--MPWFKGWQVERKEGKADGKCLIEA 415
S ++K +G+ + V FVPIS G N+++ + W+KG L+ A
Sbjct: 343 SDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG------------PTLLSA 390
Query: 416 LDAILPPARPTDKPLRLPLQDVYK 487
LD ++PP +P KPLRL + DVY+
Sbjct: 391 LDQLVPPEKPYRKPLRLSIDDVYR 414
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 69.7 bits (163), Expect = 5e-13
Identities = 37/84 (44%), Positives = 53/84 (63%)
Frame = +3
Query: 3 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 182
GH D+IKNMITG + D A+++V+A G+ QTREH LLA +GVKQ++V +N
Sbjct: 125 GHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYIN 177
Query: 183 KMDSTEPPYSEPRFEEIKKEVSSY 254
K+D EP E E+++ +S Y
Sbjct: 178 KVDMVEPDMIELVEMEMRELLSEY 201
Score = 45.6 bits (103), Expect = 8e-06
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +1
Query: 514 GRVETGVLKPGTIV--VFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRR 687
GRVE G LK G + V +++ T V +EM + L AV GDN G ++++ ++L+R
Sbjct: 272 GRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMFKKQLDAAVAGDNCGLLLRSIKREQLKR 331
Query: 688 GYVAGDSKNNPPKGAADFTAQVIVLT 765
G + P F A +LT
Sbjct: 332 GMIVAQPGTVAPH--QKFKASFYILT 355
Score = 34.7 bits (76), Expect = 0.016
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +2
Query: 404 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPSAELK 526
L+EA+D+ + P R TD P + ++DV+ I G GTV + ++
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVE 275
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.9 bits (69), Expect = 0.11
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = +3
Query: 3 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 182
GH + M+ G + D A+L++A QT EH + +K +I+ N
Sbjct: 117 GHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQLKHIIILQN 170
Query: 183 KMDSTEPPYSEPRFEEIKK 239
K+D +E ++ I K
Sbjct: 171 KVDLIRESAAEEHYQSILK 189
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -1
Query: 444 GRAGGRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCH 307
G GG S+ P+ LPS + P L E +ML CH
Sbjct: 545 GAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEELDMLMVCH 590
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 27.1 bits (57), Expect = 3.2
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Frame = -1
Query: 795 VCNRLRFDQDGKHNDLSCKICSTLRWVVFGVTSNI--------TTTQFLDGHVLYVETYI 640
+CN + + D + +C TL V T NI + +F DGH+L ETY+
Sbjct: 482 LCNIIPLNPDEVLRKGTGTLCETLL-TVEACTKNIILPNKHVDASQKFFDGHLLASETYV 540
Query: 639 VSRYSFLESFV 607
LES V
Sbjct: 541 GGHVESLESGV 551
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 228 EIKKEVSSYSRRLATTQLLSLSCPFLDGTETT 323
+IKK ++ + LAT L LS PF D + T
Sbjct: 104 QIKKFINDIKKDLATESQLPLSAPFKDESTRT 135
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -2
Query: 623 SWRASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPTARYQYHRFCI 480
SW SW +ST L +V + G T ST T RF I
Sbjct: 97 SWNPSWMVSTILVGLVSFMTSDEITTGGIVTSESTRRTYAKDTKRFNI 144
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 228 EIKKEVSSYSRRLATTQLLSLSCPFLDGTETT 323
+IKK ++ + LAT L LS PF D + T
Sbjct: 104 QIKKFINDIKKDLATESQLPLSAPFKDESTRT 135
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 26.6 bits (56), Expect = 4.2
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = -1
Query: 816 QCGNPILVCNRLRFDQDGKHNDLSCKICSTLRWVVFGVTSNITTTQFLDGHVLYV----E 649
+CG +LVC L QD ND + + + + T F GH+LY+ +
Sbjct: 751 RCGKHVLVCKLLEVLQDTSPNDRTVVLSDSNFSMNTLFTLLEKARCFHQGHLLYLSDEGK 810
Query: 648 TYIVSRYSFLESFVVHL 598
+ RY L S++ L
Sbjct: 811 DETLERYGTLSSWISKL 827
>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 508
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -2
Query: 593 DLTSVVMLAGAKTTMVP--GFNTPVSTLPTARYQYHRFCIRLAGEDAGACQWGGQVA 429
D+ + +M + +P G T S L Y L G AGAC++GG +A
Sbjct: 289 DIRTWIMFVSSVLLNIPNGGIGTFSSLLIKGTMGYDTLQTLLMGLPAGACEFGGLIA 345
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.8 bits (54), Expect = 7.4
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = -1
Query: 684 TQFLDGHVLYVET---YIVSRYSFLESFVVHLHRFDFSSDVGGGKDNNGTWFQH-TSFNS 517
T +D V+ +ET YI+SR SF+ V + D + + G + T F H +S +
Sbjct: 162 TNEIDASVV-IETLLKYILSRISFIPRVSVVPYIPDAAYGIYGSP-STFTQFNHMSSMVT 219
Query: 516 ADGTVPIPPILYTSCRG 466
+ IPPI TS G
Sbjct: 220 PENPYGIPPIALTSAGG 236
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 705 VTSNITTTQFLDGHVLYVETYIVSRYSFLESFVVHLHRF 589
+T ++ + L H+ +++ SR +FL ++H+H F
Sbjct: 1012 LTQSLQSFSHLSNHIEVLDSTRQSRLTFLCHLILHMHGF 1050
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,704,234
Number of Sequences: 5004
Number of extensions: 82519
Number of successful extensions: 293
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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