Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40567
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   176   2e-46
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   176   2e-46
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   174   7e-46
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   169   4e-44
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   116   3e-28
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.63 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.4  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  176 bits (428), Expect = 2e-46
 Identities = 78/86 (90%), Positives = 81/86 (94%)
 Frame = +2

Query: 254 LKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILP 433
           +KKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILP
Sbjct: 121 IKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILP 180

Query: 434 PARPTDKPLRLPLQDVYKIGGIGTVP 511
           P RPTDK LRLPLQDVYKIGGIGTVP
Sbjct: 181 PTRPTDKALRLPLQDVYKIGGIGTVP 206



 Score =  174 bits (424), Expect = 7e-46
 Identities = 83/88 (94%), Positives = 86/88 (97%)
 Frame = +3

Query: 3   GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 182
           GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN
Sbjct: 37  GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 96

Query: 183 KMDSTEPPYSEPRFEEIKKEVSSYSRRL 266
           KMDSTEPPYSE RFEEIKKEVSSY +++
Sbjct: 97  KMDSTEPPYSETRFEEIKKEVSSYIKKI 124



 Score =  134 bits (325), Expect = 7e-34
 Identities = 63/68 (92%), Positives = 65/68 (95%)
 Frame = +1

Query: 511 VGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 690
           VGRVETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG
Sbjct: 207 VGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 266

Query: 691 YVAGDSKN 714
           YVAGDSKN
Sbjct: 267 YVAGDSKN 274


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  176 bits (428), Expect = 2e-46
 Identities = 78/86 (90%), Positives = 81/86 (94%)
 Frame = +2

Query: 254 LKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILP 433
           +KKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILP
Sbjct: 178 IKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILP 237

Query: 434 PARPTDKPLRLPLQDVYKIGGIGTVP 511
           P RPTDK LRLPLQDVYKIGGIGTVP
Sbjct: 238 PTRPTDKALRLPLQDVYKIGGIGTVP 263



 Score =  174 bits (424), Expect = 7e-46
 Identities = 83/88 (94%), Positives = 86/88 (97%)
 Frame = +3

Query: 3   GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 182
           GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN
Sbjct: 94  GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 153

Query: 183 KMDSTEPPYSEPRFEEIKKEVSSYSRRL 266
           KMDSTEPPYSE RFEEIKKEVSSY +++
Sbjct: 154 KMDSTEPPYSETRFEEIKKEVSSYIKKI 181



 Score =  167 bits (406), Expect = 1e-43
 Identities = 79/84 (94%), Positives = 81/84 (96%)
 Frame = +1

Query: 511 VGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 690
           VGRVETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG
Sbjct: 264 VGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 323

Query: 691 YVAGDSKNNPPKGAADFTAQVIVL 762
           YVAGDSKNNPPKGAADFTAQVIVL
Sbjct: 324 YVAGDSKNNPPKGAADFTAQVIVL 347



 Score = 46.0 bits (104), Expect = 4e-07
 Identities = 20/36 (55%), Positives = 22/36 (61%)
 Frame = +3

Query: 708 QKQPT*GCCRFYSSSHCAYHPGQISNGYTPVLDCHT 815
           +  P  G   F +      HPGQISNGYTPVLDCHT
Sbjct: 330 KNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHT 365


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  174 bits (424), Expect = 7e-46
 Identities = 83/88 (94%), Positives = 86/88 (97%)
 Frame = +3

Query: 3   GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 182
           GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN
Sbjct: 21  GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 80

Query: 183 KMDSTEPPYSEPRFEEIKKEVSSYSRRL 266
           KMDSTEPPYSE RFEEIKKEVSSY +++
Sbjct: 81  KMDSTEPPYSETRFEEIKKEVSSYIKKI 108



 Score =  139 bits (336), Expect = 3e-35
 Identities = 60/67 (89%), Positives = 63/67 (94%)
 Frame = +2

Query: 254 LKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILP 433
           +KKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILP
Sbjct: 105 IKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILP 164

Query: 434 PARPTDK 454
           P RPTDK
Sbjct: 165 PTRPTDK 171


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  169 bits (410), Expect = 4e-44
 Identities = 80/88 (90%), Positives = 84/88 (95%)
 Frame = +3

Query: 3   GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 182
           GHRDFIKNMITGTSQADCAVLIVAAG GEFEAGISKNGQTREHALLAFTLGVKQLIVGVN
Sbjct: 94  GHRDFIKNMITGTSQADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 153

Query: 183 KMDSTEPPYSEPRFEEIKKEVSSYSRRL 266
           KMD T+PPYSE RFEEIKKEVSSY +++
Sbjct: 154 KMDMTDPPYSEARFEEIKKEVSSYIKKI 181



 Score =  168 bits (408), Expect = 6e-44
 Identities = 74/86 (86%), Positives = 80/86 (93%)
 Frame = +2

Query: 254 LKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILP 433
           +KKIGYN A+VAFVPISGWHGDNMLEPS K PW+KGW+VERK+G ADGK LIEALDAILP
Sbjct: 178 IKKIGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAILP 237

Query: 434 PARPTDKPLRLPLQDVYKIGGIGTVP 511
           P+RPTDK LRLPLQDVYKIGGIGTVP
Sbjct: 238 PSRPTDKALRLPLQDVYKIGGIGTVP 263



 Score =  158 bits (383), Expect = 7e-41
 Identities = 73/84 (86%), Positives = 79/84 (94%)
 Frame = +1

Query: 511 VGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 690
           VGRVETG+LKPG +V FAPA +TTEVKSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRG
Sbjct: 264 VGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVGFNVKNISVKELRRG 323

Query: 691 YVAGDSKNNPPKGAADFTAQVIVL 762
           YVAGDSKN PP+GAADFTAQVIVL
Sbjct: 324 YVAGDSKNQPPRGAADFTAQVIVL 347



 Score = 48.0 bits (109), Expect = 1e-07
 Identities = 21/36 (58%), Positives = 23/36 (63%)
 Frame = +3

Query: 708 QKQPT*GCCRFYSSSHCAYHPGQISNGYTPVLDCHT 815
           + QP  G   F +      HPGQISNGYTPVLDCHT
Sbjct: 330 KNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHT 365



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 641 LSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFN 534
           L PG     A   ++T++ SV M   A T  +PG N
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDN 307


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  116 bits (278), Expect = 3e-28
 Identities = 53/58 (91%), Positives = 56/58 (96%)
 Frame = +1

Query: 589 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL 762
           KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVL
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVL 58



 Score = 48.0 bits (109), Expect = 1e-07
 Identities = 21/36 (58%), Positives = 23/36 (63%)
 Frame = +3

Query: 708 QKQPT*GCCRFYSSSHCAYHPGQISNGYTPVLDCHT 815
           + QP  G   F +      HPGQISNGYTPVLDCHT
Sbjct: 41  KNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHT 76


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 24/78 (30%), Positives = 33/78 (42%)
 Frame = +3

Query: 3   GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 182
           GH  FI     G    D  VL+VAA  G  E       QT +   +A    V  +IV +N
Sbjct: 202 GHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV-PIIVAIN 253

Query: 183 KMDSTEPPYSEPRFEEIK 236
           K+D       + ++E  K
Sbjct: 254 KIDKPNIDIIKVQYELAK 271


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 695 LLVTPKTTHLRVLQILQLKSLCLPSWSN 778
           L  TP++THL+V  I ++ S   PS  N
Sbjct: 381 LCPTPRSTHLKVSGINRVGSTRRPSRRN 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,885
Number of Sequences: 438
Number of extensions: 5749
Number of successful extensions: 27
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)