Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40565
(348 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 115 2e-28
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 115 2e-28
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 23 1.4
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 22 1.8
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 22 2.4
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 20 7.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse tr... 20 9.6
DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse tr... 20 9.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 20 9.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 20 9.6
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 115 bits (276), Expect = 2e-28
Identities = 52/62 (83%), Positives = 58/62 (93%)
Frame = +1
Query: 22 RMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKK 201
RMMMQSGRAKS+ILYK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK
Sbjct: 239 RMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKN 298
Query: 202 VL 207
+L
Sbjct: 299 LL 300
Score = 29.5 bits (63), Expect = 0.012
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 64 YKNTIHCWATIAKTEGTSAFFKGAFSNVLR 153
YK I C+ I K +G ++++G +NV+R
Sbjct: 53 YKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 115 bits (276), Expect = 2e-28
Identities = 52/62 (83%), Positives = 58/62 (93%)
Frame = +1
Query: 22 RMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKK 201
RMMMQSGRAKS+ILYK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK
Sbjct: 239 RMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKN 298
Query: 202 VL 207
+L
Sbjct: 299 LL 300
Score = 29.5 bits (63), Expect = 0.012
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 64 YKNTIHCWATIAKTEGTSAFFKGAFSNVLR 153
YK I C+ I K +G ++++G +NV+R
Sbjct: 53 YKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 22.6 bits (46), Expect = 1.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 197 LISSYKTSTKAPPVPLRTLEKAPL 126
L++++KT T+ P + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 22.2 bits (45), Expect = 1.8
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -3
Query: 256 RTESHRNYGNNSYVRFTGP 200
R ++ YG N+ +R+ GP
Sbjct: 415 RVAAYNTYGRNAGLRYRGP 433
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 21.8 bits (44), Expect = 2.4
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -3
Query: 262 WLRTESHRNYGNNSYVRF 209
W+R++ R G +Y R+
Sbjct: 263 WMRSQFERKRGRQTYTRY 280
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 20.2 bits (40), Expect = 7.3
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2
Query: 41 VVPRAISCTRTPST 82
++PR ISC TP +
Sbjct: 653 LLPRPISCHTTPDS 666
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 113 VPSVLAMVAQQWMVFLYRIS 54
+PS + M+ QW+ L R+S
Sbjct: 291 MPSWIKMLFLQWLPCLLRMS 310
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 113 VPSVLAMVAQQWMVFLYRIS 54
+PS + M+ QW+ L R+S
Sbjct: 291 MPSWIKMLFLQWLPCLLRMS 310
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 113 VPSVLAMVAQQWMVFLYRIS 54
+PS + M+ QW+ L R+S
Sbjct: 291 MPSWIKMLFLQWLPCLLRMS 310
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 113 VPSVLAMVAQQWMVFLYRIS 54
+PS + M+ QW+ L R+S
Sbjct: 291 MPSWIKMLFLQWLPCLLRMS 310
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 113 VPSVLAMVAQQWMVFLYRIS 54
+PS + M+ QW+ L R+S
Sbjct: 291 MPSWIKMLFLQWLPCLLRMS 310
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 113 VPSVLAMVAQQWMVFLYRIS 54
+PS + M+ QW+ L R+S
Sbjct: 291 MPSWIKMLFLQWLPCLLRMS 310
>DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse
transcriptase protein.
Length = 127
Score = 19.8 bits (39), Expect = 9.6
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 218 R*IYRTFLISSYKTS 174
R I R FLIS KTS
Sbjct: 75 RYIIRMFLISQQKTS 89
>DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse
transcriptase protein.
Length = 110
Score = 19.8 bits (39), Expect = 9.6
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 218 R*IYRTFLISSYKTS 174
R I R FLIS KTS
Sbjct: 58 RYIIRMFLISQQKTS 72
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 113 VPSVLAMVAQQWMVFLYRIS 54
+PS + M+ QW+ L R+S
Sbjct: 359 MPSWIKMLFLQWLPCLLRMS 378
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 113 VPSVLAMVAQQWMVFLYRIS 54
+PS + M+ QW+ L R+S
Sbjct: 359 MPSWIKMLFLQWLPCLLRMS 378
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,479
Number of Sequences: 438
Number of extensions: 1285
Number of successful extensions: 18
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 7936320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
- SilkBase 1999-2023 -