Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40564
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    29   1.1  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.9  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   5.8  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   7.6  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 250 TATGSFTASCSDMASTCITFNSSGLASGPNN 158
           ++T S+  + +++  T  +F SSGL SGP N
Sbjct: 559 SSTSSYIDTTNNVLKTNSSFKSSGLTSGPRN 589


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 759 PARCLRTYSFSVVTYDR 809
           PA+CLR Y  S+ TYDR
Sbjct: 46  PAKCLRFYQKSLETYDR 62


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 72  LSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 218
           L +S ++  +  +  AE     KL+  Q L+G DAK D L ++ V A S
Sbjct: 536 LYTSSENWVYSEQQLAEVRNMEKLLDAQ-LMGGDAKVDRLRLLMVFASS 583


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 77  IITSVRDMGSRGKSRIPTQQQARHSSSIVRSRCQTR*IKCDTG 205
           +   V+D+  + K R+P +Q+ R   +     C+ + IKC+ G
Sbjct: 12  LFADVKDLERKKKRRVPPEQRRRVFRAC--KHCRQKKIKCNGG 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,465
Number of Sequences: 5004
Number of extensions: 58592
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)