Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40564
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0241 - 13243938-13244453,13244538-13246334                       30   2.6  
01_05_0764 + 25005657-25006186,25007107-25007250,25007414-25007879     30   2.6  
10_08_0649 + 19589807-19591024                                         29   4.6  
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899     28   8.0  

>04_03_0241 - 13243938-13244453,13244538-13246334
          Length = 770

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 435 EMILSSRMKIMKKVNPRAKKRKCRICQRQSCIAQEECQEM 554
           ++ +  R+K+ K+ N  AK+R  RI ++ +    E CQ +
Sbjct: 653 KVAVGRRVKLRKQYNTGAKRRSARIAKQPALPTMERCQRV 692


>01_05_0764 + 25005657-25006186,25007107-25007250,25007414-25007879
          Length = 379

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 455 DEDNEEGEPKGKKAKMSNMPKAKLHRPRRMPR 550
           +E++++ E  G+ +K  N PK K  + +R PR
Sbjct: 161 EEEDDKDEEDGENSKKPNKPKKKAEKRQRQPR 192


>10_08_0649 + 19589807-19591024
          Length = 405

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 322 CSGFGASTLNWTPSPW 369
           C+G+GA+  +W P PW
Sbjct: 31  CAGWGAAAASWRPRPW 46


>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
          Length = 712

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +3

Query: 501 CRICQRQSCIAQEECQEMNKPPGDPFWASRTVAILGIIISKLCR 632
           C I    S  A+EEC  ++  PGD  W         I  S L R
Sbjct: 110 CTILVASSTEAEEECYLLHCHPGDEMWTKSVSPYDDISFSSLMR 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,062,540
Number of Sequences: 37544
Number of extensions: 412089
Number of successful extensions: 981
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)