Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40562
         (822 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.9  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   5.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 336 TVTVHLI--I*NFYLSLKYIF--PLFYFSACMCLCEFWSIFGFLIV 461
           T  VHL+  + + Y ++  +F  P   F+    LC ++  + F+I+
Sbjct: 65  TFNVHLLFLLCSGYFTVHLLFYCPFIIFTVHFLLCTYYFYYAFIIL 110



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 399 FYFSACMCLCEFWSIFGFLIVNFFL 473
           FY++  + LC ++  + F+I    L
Sbjct: 103 FYYAFIILLCVYYFYYAFIIFTVHL 127


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 582 NCVSINRSCELSRTTDISITTVKIHYYLR 496
           N VS  R CEL+   ++  +T+K+ +  R
Sbjct: 94  NYVSRPRRCELAAQLNLPESTIKVWFQNR 122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,429
Number of Sequences: 336
Number of extensions: 3743
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)