Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40562
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    30   0.46 
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi...    27   2.4  
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po...    27   4.3  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    26   5.6  
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1...    25   9.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   9.8  

>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 365 ISNYQVHSYCCVS-SFTLHTCVLSASFLTLSIA*KLT 258
           I  Y   +Y  V   F L TC++S SFLT ++  KLT
Sbjct: 473 IKLYFAQTYSSVKLGFMLGTCIVSVSFLTFTVYAKLT 509


>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
           Hub1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 73

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = -2

Query: 404 VKQWENIFKRQIKISNYQVH 345
           +K+W ++FK  I +++Y++H
Sbjct: 44  LKKWHSVFKDNITLADYEIH 63


>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 167

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 378 LKYIFPLFYFSACMCLCEFWS 440
           LKY+ PL++ ++  CL  FWS
Sbjct: 66  LKYLLPLYFLAS--CLLTFWS 84


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 173 PPYQICIELERLPTFAATVPHCSNCIKIELTFTLSKALKNS 295
           PP Q  I+   +P F   + H +N +K E ++ L+     S
Sbjct: 112 PPIQKVIDAGVVPRFVEFLSHENNLLKFEASWALTNVASGS 152


>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 283

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -2

Query: 209 ANVPTQYKFDMVAYGLTLTEFLSTGPSKCSGSLNRSLDPQEIRRK 75
           ANV   Y   +V  G+TL      G   C GSL R    ++IRRK
Sbjct: 165 ANVVGNYN-TVVFNGITLERSTMHGVETCGGSLQRK---KKIRRK 205


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 472  KKKFTIRKPKIDQNSQRHIQAEK*NNGKIYLSDK 371
            K  +  R  K+ QNS+RH+Q+      K+Y S++
Sbjct: 1758 KSSYMERLEKLKQNSERHLQSV--GGKKVYSSEE 1789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,041
Number of Sequences: 5004
Number of extensions: 60664
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)