Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40562
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0345 - 3811057-3811236,3811342-3811615,3811732-3812289,381...    29   4.5  
07_03_1606 + 28111158-28111328,28111431-28111549,28111984-281120...    29   5.9  
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    28   7.8  
05_04_0349 + 20492334-20492494,20493245-20493324,20493951-204940...    28   7.8  

>10_01_0345 -
           3811057-3811236,3811342-3811615,3811732-3812289,
           3812602-3812747,3812930-3813097,3813896-3814003,
           3814859-3815029,3816557-3816949,3817522-3817617,
           3817715-3817774,3818600-3818744,3819296-3819520,
           3820106-3820254
          Length = 890

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 358 FEIFICRLNIFSHCFTFQLVCAFANSGL 441
           F++++C     +H +TF + C F N  L
Sbjct: 412 FQVYVCSQLFTTHQYTFSIACCFCNDYL 439


>07_03_1606 +
           28111158-28111328,28111431-28111549,28111984-28112024,
           28112654-28112713,28112812-28112858,28112939-28113133,
           28113236-28113282,28113363-28113429,28113521-28113621,
           28113725-28113826,28113904-28114042,28114120-28114182,
           28114323-28114406,28114981-28115295
          Length = 516

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 348 HLII*NFYLSLKYIFPLFYFSACMCLCEF--WSIFGFLIVNF 467
           HL + +  L   Y+ P   F+A  CL EF  WSI+   I  F
Sbjct: 75  HLFVFSEDLFFIYLLPPIIFNAGFCLLEFYSWSIYSAAIAIF 116


>07_01_0242 +
           1775704-1776797,1776839-1777759,1778312-1778412,
           1778770-1778900,1779530-1779788,1779823-1780098,
           1780100-1781352
          Length = 1344

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -1

Query: 309 LCA*CEFFNAFDSVKVNSIFMQLEQWGTVAANVGKRSNSIQI*YGGLR 166
           LC  C+F    D +     F +L +WGTV  + G R    QI +GG R
Sbjct: 784 LCEDCKF--TIDYLDCIEEFRRLSEWGTVPPSSGAR----QISFGGAR 825


>05_04_0349 +
           20492334-20492494,20493245-20493324,20493951-20494020,
           20494089-20494139,20494535-20494649,20495401-20496268,
           20496453-20496628,20500217-20500276,20501617-20501694,
           20501951-20502008,20502658-20502720,20503397-20503453,
           20503599-20503661,20504081-20504454
          Length = 757

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 167 RKPPYQICI-ELERLPTFAATVPHCSNCIKIEL 262
           R+PP + C+ + E +P    T+  C+NC+++ +
Sbjct: 115 REPPSKRCVKQAEFVPVMRQTMGFCNNCLRMAI 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,435,873
Number of Sequences: 37544
Number of extensions: 330632
Number of successful extensions: 629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)