Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40561
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    29   0.68 
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    29   0.68 
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    28   1.6  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    27   3.6  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     27   3.6  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    27   3.6  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    26   6.4  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    26   6.4  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   8.4  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   8.4  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    25   8.4  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   8.4  

>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +2

Query: 29  FRI*FLVMDLLLKPVIDNYSNTYFSIEKQKSPSYVGMYTKDNKEIVMVYEKSKQML 196
           FR+    +   L+P++DNYS+    + K++ P    + T  + EIV    + K+++
Sbjct: 496 FRMILRAVSQTLRPLLDNYSDLDTWVIKEQLPGAALLSTSVSAEIVGFQSRLKEII 551


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
 Frame = +1

Query: 382  IANLYNSNRL---ESTEETLPMWILTTPTDQIKALLLYVQPDKEKSNEVL*RTKGLVDLK 552
            I ++ NS RL   ++TEET  +W+LTT  + +KA +  ++   E+ + +L +   L++ K
Sbjct: 1459 ILSITNSQRLYLAKNTEET-EVWMLTTMVEALKAFIELIKNLFERLHFLLPKALNLLE-K 1516

Query: 553  TLILEN 570
             +  EN
Sbjct: 1517 CICQEN 1522


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 454 PTDQIKALLLYVQPDKEKSNEVL*RTKGLVDLKTLI 561
           PT  +  L  Y +   E +N+V    KG +D KTL+
Sbjct: 57  PTSNLDLLARYFEKYPENANKVFLSVKGGLDFKTLV 92


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 501 RKVKRGIVTYEGSRGFEDIDIGELIENYAKEENLSTDSINI 623
           RKVK+   T +   GF      E+ E+++++EN+ST + N+
Sbjct: 299 RKVKK-YATTKDEEGFLVTKEEEVWESFSEDENISTGTSNV 338


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +2

Query: 11  HNLLNIFRI*FLVMDLLLKPVIDN-YSNTYFSIEKQKSPSYVGMYTKDNKEIVMVYEKSK 187
           HN+  +     + M   LK +  N +  TY  +  + SP  VG+  K  K+ ++ + + K
Sbjct: 9   HNMAELLHPNKVEMKPFLKNLDKNLFKKTYNLVAAKVSPKKVGLLNKVCKKDLLDWPRVK 68

Query: 188 QMLIDETEEKITNKQSENLDLT 253
            +     E+ +   +  +LD T
Sbjct: 69  HVYQQNNEKLVLLNRDASLDGT 90


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/50 (24%), Positives = 30/50 (60%)
 Frame = +2

Query: 101 SIEKQKSPSYVGMYTKDNKEIVMVYEKSKQMLIDETEEKITNKQSENLDL 250
           +++ Q+SP Y+G Y K   + + +++     +I +T +++  K S+ +D+
Sbjct: 214 NLDFQESPHYLGQYKKLLSQAMDIFKPYFIRIIKQTTDQVL-KDSKKMDV 262


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 146 KDNKEIVMVYEKSKQMLIDETEEKITNKQSEN 241
           +DNK + +  E+S  + I +  E  TNK SEN
Sbjct: 486 QDNKALFVKPERSSTVTIRKPIESSTNKISEN 517


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 629 YGNIYRISTQILFLSIVLYQFSNINVFKSTRP 534
           + NIYRI  ++ +  + L Q+  IN+F    P
Sbjct: 584 FSNIYRILGKVTYKFLKLVQYFIINIFDILSP 615


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 128 YVGMYTKDNKEIVMVYEKSKQMLIDETEEKITNKQSENLDLTGHRSN 268
           ++G   + +KE++  YE SK    D  EE  T+++ ++L     + N
Sbjct: 119 FLGSSKRKSKELIEAYEASKTP-PDLKEESSTDEEMDSLSAAEEKPN 164


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 298 ETFSSDEPQLWAKEEGSHGPISIDKAREIANLYNSNRLESTEE 426
           E   +D+P+   K+E     + I  A E +NL ++   + T E
Sbjct: 362 ENIKADQPENSTKQENPEEDMQIKDAEEHSNLESTPAAQQTSE 404


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 388 NLYNSNRLESTEETLPMWILTTPTDQIKALLLYVQPDKEKSNEVL*RTKGLVDLKTLILE 567
           NL+   R   T +  P ++       IKAL +  + D  K  +    TKG V ++ L+ +
Sbjct: 586 NLFYEKRYSHTHQKNPNFVKLADAMGIKALRVEKREDLAKKMKEFLSTKGPVLMEVLVAQ 645


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 373 AREIANLYNSNRLESTEET 429
           ARE+AN YNS+R E   +T
Sbjct: 96  ARELANRYNSHRPERRRKT 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,658
Number of Sequences: 5004
Number of extensions: 56340
Number of successful extensions: 170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)