Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40556
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    29   0.92 
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.6  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    27   2.1  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    27   3.7  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      26   6.5  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    25   8.6  

>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 471 PESVLVISTCTHFVQN-FLHTFLSYNFYPYIYCNRIAKTELTSTINIIKMKTILHYFYTE 647
           P S L+   C  + Q  ++      N  P  YC + A++ L +T  +I   +IL      
Sbjct: 145 PTSALLAEICYSYGQRAYIGKCNMNNLSPDHYCEKSAESSLEATRQLISYMSILDPKREM 204

Query: 648 TTPII 662
            TPII
Sbjct: 205 VTPII 209


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 414 CVAVYEVL*MYNVVLPVVAPESVLVISTCTHFVQNFLHTFL--SYNFYPYIYCNRI 575
           C+A + V  +Y     ++AP +   +S  +  V +FLH ++  +  +Y  IY   I
Sbjct: 325 CIAGFVVNELYTTRTRIIAPSAFQTLSLSSVMVTSFLHYYIMSTVTYYIPIYFQSI 380


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 409 LMLHVRCSNKTSLQRHLLTKKHNR 338
           L  HV C NK  L+ H+  K+H R
Sbjct: 149 LCCHVPCKNKKLLREHMNNKRHFR 172


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = +3

Query: 477 SVLVISTCTHFVQNFLHTFLSYNFYPYIYCNRIAKTELTSTINIIKMKTILHYFYTETTP 656
           S+L  S    FVQ FL     +  + Y    RI     +S +  ++    L   YT   P
Sbjct: 236 SILFRSEGLSFVQ-FLVCIAVFATFMYTLNIRIDVPIRSSRVRGVRQNFPLKLLYTSVIP 294

Query: 657 IIFYGILFMNLIIDAFQVLIL 719
           +I++  +  +L++ A+ +  L
Sbjct: 295 LIYFYSILSHLLVFAYALYSL 315


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
 Frame = +3

Query: 351 FVNRCRCNDVLFEQRTCSINACVAVYEVL*MYNVVLPVV----APESVLVISTCTHFVQN 518
           FV R  CN+  F      + +C+ +   L   + +L  +    +P+SV  I+        
Sbjct: 126 FVLRKPCNNRTFPNYMGIVKSCILIVLTLAGLSPILMSLTKSTSPDSVWAIAVWLFLANV 185

Query: 519 FLHTFLSYNFYPYIYCNRIAKTELTSTINII 611
           F H + +    P++  +    T    + +++
Sbjct: 186 FFHEYTTETIRPHVRLHNSLSTNAALSASVV 216


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 414 CVAVYEVL*MYNVVLPVVAPESVLVISTCTHFVQNFLHTFL--SYNFYPYIYCNRI 575
           C+A + V   Y     ++ P +   +S  +  V +FLH ++  +  +Y  +Y   I
Sbjct: 325 CIAGFVVNEFYTTRTRIITPSAFKTLSLTSVMVTSFLHYYIVSTITYYIPVYFQNI 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,447
Number of Sequences: 5004
Number of extensions: 59858
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)