Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40556
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.3  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   2.3  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   9.2  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 549 YPYIYCNRIAKTELTSTINIIKMKTILHYFYTETTPIIFYGILFMNLIIDAFQVL 713
           YP  Y  R+   +     NI+  K  L   + +  P+ FYG     +I+DA + L
Sbjct: 150 YPEDYGKRVLSMD--GYQNILDKKDELLGEWEKRAPMGFYGTRGKKIILDALEEL 202


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 549 YPYIYCNRIAKTELTSTINIIKMKTILHYFYTETTPIIFYGILFMNLIIDAFQVL 713
           YP  Y  R+   +     NI+  K  L   + +  P+ FYG     +I+DA + L
Sbjct: 150 YPEDYGKRVLSMD--GYQNILDKKDELLGEWEKRAPMGFYGTRGKKIILDALEEL 202


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 549 YPYIYCNRIAKTELTSTINIIKMKTILHYFYTETTPIIFYGILFMNLIIDAFQVL 713
           YP  Y  R+   +     NI+  K  L   + +  P+ FYG     +I+DA + L
Sbjct: 150 YPEDYGKRVLSMD--GYQNILDKKDELLGEWEKRAPMGFYGTRGKKIILDALEEL 202


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
 Frame = -2

Query: 591 LILSLQCDYN------KYKDKNYMIKRYVRSFVQNV 502
           +I SL  +YN      KY   NY  K Y ++++ N+
Sbjct: 314 IISSLSNNYNYNNNNYKYNYNNYNKKLYYKNYIINI 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,049
Number of Sequences: 438
Number of extensions: 4500
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)