Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40556
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03490.1 68417.m00476 ankyrin repeat family protein contains ...    30   1.4  
At1g07850.1 68414.m00852 fringe-related protein + weak similarit...    29   2.5  
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:...    29   2.5  

>At4g03490.1 68417.m00476 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 587

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = +3

Query: 501 THFVQNFLHTFLSYNFYPYIYCNRIA-KTELTSTINII-----KMKTILHYFYTETTPII 662
           T F  N  H++    F+ ++ CN IA  T + ST+ +I      +K +L  F     P++
Sbjct: 381 TEFKSNVKHSYEESAFHAFVICNSIAVYTAVISTVALIGTQLADLKCMLTTF-KFIVPLL 439

Query: 663 FYGILFMNLIIDAFQVLIL 719
            + I+ M+L   A   L+L
Sbjct: 440 GFSIIAMSLAFVAGLYLVL 458


>At1g07850.1 68414.m00852 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 560

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -3

Query: 347 TQPRMRHLCFRPWYYFTSQY*TRYRLGKREVYLFIYNLNNT 225
           T+P  RH C RP+ ++ +    +Y  G+R+V +  YNL+ T
Sbjct: 458 TRPVSRHPCQRPFVFYLNS--AKYDEGRRQV-IGYYNLDKT 495


>At1g04600.1 68414.m00454 myosin, putative similar to myosin
           (GI:499047) [Arabidopsis thaliana]
          Length = 1730

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -3

Query: 377 IVTATSVDEETQPRMRHLCFRPWYYFTSQY*TRYRLGKREVYLFIYNLNNTACCLLDGID 198
           ++  + V + + P   + CF        Q   RY+LGK   + +   LN + C  LDG+D
Sbjct: 237 LLERSRVCQVSDPERNYHCFYMLCAAPEQETERYKLGKPSTFRY---LNQSNCYALDGLD 293


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,857,202
Number of Sequences: 28952
Number of extensions: 269187
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)