Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40555
(626 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 156 5e-37
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 154 1e-36
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 149 4e-35
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 130 2e-29
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 126 4e-28
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 122 9e-27
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 118 1e-25
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 118 2e-25
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 107 3e-22
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 102 8e-21
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 87 2e-16
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 81 2e-14
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 74 2e-12
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 70 4e-11
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 51 2e-05
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 49 8e-05
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 49 8e-05
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 48 1e-04
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 46 7e-04
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 44 0.002
UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5; Sulfolo... 43 0.007
UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2; Desulfu... 40 0.037
UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyr... 40 0.037
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 40 0.065
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 38 0.20
UniRef50_Q6DFG0 Cluster: Rho GTPase-activating protein 21-A; n=2... 38 0.26
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 37 0.45
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 37 0.45
UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8; Euryarc... 34 2.4
UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcin... 34 3.2
UniRef50_A0UBB5 Cluster: Putative uncharacterized protein; n=1; ... 33 7.4
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 156 bits (378), Expect = 5e-37
Identities = 74/94 (78%), Positives = 82/94 (87%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
DKQGFPMKQGVLT+ RVRLL+SKGHSCYRPRR GERKRKSVRGCIVDANLSVL LVIV+K
Sbjct: 57 DKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKK 116
Query: 182 GAQEIPGLTDGNVPRRLGPKRASKTVSCSTLAKK 283
G ++IPGLTD VPRRLGPKRAS+ L+K+
Sbjct: 117 GEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKE 150
Score = 84.6 bits (200), Expect = 2e-15
Identities = 50/84 (59%), Positives = 55/84 (65%)
Frame = +1
Query: 256 RKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXX 435
RKLFNLSKEDDVR+YVV++ L KEGK KPR KAPKIQRLVTP VLQ
Sbjct: 142 RKLFNLSKEDDVRQYVVRKPL-NKEGK---KPRTKAPKIQRLVTPRVLQHKRRRIALKKQ 197
Query: 436 XXXXXXSSEAEYAKLLAQRKKESK 507
AEYAKLLA+R KE+K
Sbjct: 198 RTKKNKEEAAEYAKLLAKRMKEAK 221
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 154 bits (374), Expect = 1e-36
Identities = 70/94 (74%), Positives = 80/94 (85%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
DKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVIV+K
Sbjct: 57 DKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKK 116
Query: 182 GAQEIPGLTDGNVPRRLGPKRASKTVSCSTLAKK 283
G Q+IPGLTD +PRRLGPKR K L+K+
Sbjct: 117 GEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKE 150
Score = 89.8 bits (213), Expect = 5e-17
Identities = 48/84 (57%), Positives = 56/84 (66%)
Frame = +1
Query: 256 RKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXX 435
RK+FNLSKEDDVR+YV++R LP KEGK K + KAPKIQRLVTPVVLQ
Sbjct: 142 RKMFNLSKEDDVRQYVIRRPLPEKEGK---KAKSKAPKIQRLVTPVVLQRKRKRLALKRQ 198
Query: 436 XXXXXXSSEAEYAKLLAQRKKESK 507
A+YAKLLA+R KE+K
Sbjct: 199 RAQKCKQEAADYAKLLAKRAKEAK 222
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 149 bits (362), Expect = 4e-35
Identities = 70/94 (74%), Positives = 78/94 (82%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
DKQGFPMKQGVLTN+RVRLL+ KGHSCYRPRR GERKRKSVRGCIVD NLS LAL++V+K
Sbjct: 57 DKQGFPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKK 116
Query: 182 GAQEIPGLTDGNVPRRLGPKRASKTVSCSTLAKK 283
G ++IPGLTD V RRLGPKRAS L K+
Sbjct: 117 GEKDIPGLTDTTVLRRLGPKRASNIRKLYNLTKE 150
Score = 87.8 bits (208), Expect = 2e-16
Identities = 47/90 (52%), Positives = 60/90 (66%)
Frame = +1
Query: 256 RKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXX 435
RKL+NL+KEDDVR+YVVKR LP K+GK KPR KAPKIQRL+TPVVLQ
Sbjct: 142 RKLYNLTKEDDVRQYVVKRPLPEKDGK---KPRTKAPKIQRLITPVVLQRKRHRLAIKKR 198
Query: 436 XXXXXXSSEAEYAKLLAQRKKESKGVARKS 525
+EAEY K+L R+++ + + R+S
Sbjct: 199 RVESRKEAEAEYMKILHLRRRQER-IRRRS 227
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 130 bits (315), Expect = 2e-29
Identities = 60/84 (71%), Positives = 69/84 (82%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
DKQGFPM+QGVL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLAL +V+K
Sbjct: 57 DKQGFPMRQGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKK 116
Query: 182 GAQEIPGLTDGNVPRRLGPKRASK 253
GA EI GLTD NVPRRLGPKR +K
Sbjct: 117 GANEIAGLTDQNVPRRLGPKRLTK 140
Score = 35.9 bits (79), Expect = 0.79
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +1
Query: 256 RKLFNLSKEDDV---RRYVVKRVLPAKEGKENAKPRHKAPKIQRLVT 387
R+LF K D V ++ +++R K+GK+ R KAPKIQRLVT
Sbjct: 142 RRLFGFKKADGVAIVQKNLIRRTWTTKDGKK----RQKAPKIQRLVT 184
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 126 bits (304), Expect = 4e-28
Identities = 58/84 (69%), Positives = 68/84 (80%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
DKQGFPM QGVLTN+RVRLL KG CYRPR+ GE++RKSVRGCIV +LS L L +V+K
Sbjct: 98 DKQGFPMMQGVLTNNRVRLLFKKGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTLVKK 157
Query: 182 GAQEIPGLTDGNVPRRLGPKRASK 253
G EIPGLTD V ++LGPKRA+K
Sbjct: 158 GTNEIPGLTDKAVGKKLGPKRATK 181
Score = 46.8 bits (106), Expect = 4e-04
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = +1
Query: 256 RKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVT 387
RKLFNL K DDVR+YV+ R + +N K R PKIQRLVT
Sbjct: 183 RKLFNLDKTDDVRKYVIGRAI-----SKNGKNRFIKPKIQRLVT 221
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 122 bits (293), Expect = 9e-27
Identities = 55/83 (66%), Positives = 66/83 (79%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
DKQGFPMKQGV+T R+RLL+ G SCYRPR+DGERKRK+VRGCI+ +S L V+++K
Sbjct: 57 DKQGFPMKQGVITPRRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDEISALHCVVLQK 116
Query: 182 GAQEIPGLTDGNVPRRLGPKRAS 250
G +EI GLT VPRR GPKRAS
Sbjct: 117 GEKEIDGLTTTAVPRRFGPKRAS 139
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 118 bits (284), Expect = 1e-25
Identities = 57/94 (60%), Positives = 68/94 (72%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
DK GFPMKQGV+ RVRLL+S+GHSC+ RR G RKRKSVRGCIV ++ VLAL IV+K
Sbjct: 57 DKDGFPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKK 116
Query: 182 GAQEIPGLTDGNVPRRLGPKRASKTVSCSTLAKK 283
G EI GLT +PR+LGPKRA+ L K+
Sbjct: 117 GVAEIDGLTTVTLPRKLGPKRANNIKKLFGLKKE 150
Score = 48.8 bits (111), Expect = 1e-04
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Frame = +1
Query: 256 RKLFNLSKEDD---VRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXX 426
+KLF L KEDD +++ V++R +GK+ R K PKIQRL+TP +
Sbjct: 142 KKLFGLKKEDDPILIKKSVIRRTFKTAKGKD----RTKCPKIQRLITPERILRKKVYKAE 197
Query: 427 XXXXXXXXXSSEAEYAKLLAQRKKESKGVARKSS 528
+++ EY K L++ KK+ A +S
Sbjct: 198 KTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHAAS 231
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 118 bits (283), Expect = 2e-25
Identities = 63/115 (54%), Positives = 75/115 (65%)
Frame = +2
Query: 23 KQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPG 202
KQGVL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLAL +V+KGA EI G
Sbjct: 69 KQGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANEIAG 128
Query: 203 LTDGNVPRRLGPKRASKTVSCSTLAKKMMYVVMSSNACSQPRKEKKMLNPDIRHL 367
LTD NVPRRLGPKR +K KK V+ S Q +K+ P I+ L
Sbjct: 129 LTDQNVPRRLGPKRLTKLRRLFGF-KKADRVISSEEHGPQRYGKKRQKAPKIQRL 182
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 107 bits (256), Expect = 3e-22
Identities = 51/84 (60%), Positives = 63/84 (75%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
D QGFPM QGVL + R RLL+ +G CY RR+GERKRKS+RGCIV +L L++V+V
Sbjct: 63 DAQGFPMYQGVLKSQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDA 122
Query: 182 GAQEIPGLTDGNVPRRLGPKRASK 253
G + +PGLTD VP+RL PKRASK
Sbjct: 123 GDKTLPGLTDVVVPKRLVPKRASK 146
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 102 bits (244), Expect = 8e-21
Identities = 48/94 (51%), Positives = 66/94 (70%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
DK GFPM GV TN+RVRLL+ + CY+P R+GER+RK+VRG IV ++SVL ++V+K
Sbjct: 56 DKDGFPMMTGVATNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKK 115
Query: 182 GAQEIPGLTDGNVPRRLGPKRASKTVSCSTLAKK 283
G EI G+T+ +P R GP+RAS L++K
Sbjct: 116 GEGEIEGVTNDALPMRAGPQRASHFRKLFNLSQK 149
Score = 33.5 bits (73), Expect = 4.2
Identities = 12/19 (63%), Positives = 19/19 (100%)
Frame = +1
Query: 256 RKLFNLSKEDDVRRYVVKR 312
RKLFNLS++DDV+++V++R
Sbjct: 141 RKLFNLSQKDDVKKFVIRR 159
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 87.4 bits (207), Expect = 2e-16
Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRR--DGERKRKSVRGCIVDANLSVLALVIV 175
DK GFPM GVL +SRV LL+ +G + R GER+RK+VRGC++ ++++++ + I
Sbjct: 58 DKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTIS 117
Query: 176 RKGAQEIPGLTDGNVPRRLGPKRASK 253
+ G Q I G+TD PRRLGPKRASK
Sbjct: 118 KVGDQPIEGVTDTTAPRRLGPKRASK 143
Score = 57.2 bits (132), Expect = 3e-07
Identities = 34/81 (41%), Positives = 45/81 (55%)
Frame = +1
Query: 256 RKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXX 435
RKLFNLS+ +DVR+YVV+R + K GK K R KAPKIQRL+TP V
Sbjct: 145 RKLFNLSRTEDVRKYVVRRRV-VKSGK---KDRLKAPKIQRLITPRVKARRAKKAKDAIA 200
Query: 436 XXXXXXSSEAEYAKLLAQRKK 498
+ EY +L+A ++
Sbjct: 201 KVRASAAERREYLRLIASNRR 221
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 81.0 bits (191), Expect = 2e-14
Identities = 50/121 (41%), Positives = 69/121 (57%), Gaps = 7/121 (5%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
D QGFPM G LT RVR L+SKG + YR RR G R+RKSVRG IV + VL L+I+R
Sbjct: 42 DYQGFPMVSGHLTKKRVRPLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIILRP 101
Query: 182 GAQEIPGLTD-----GNVPRRLGPKRASKTVSCSTLAKKMMYVVMS--SNACSQPRKEKK 340
G +EI GLT+ ++PR+ K+ K K ++ + + + C P+K K
Sbjct: 102 GEKEIDGLTNAVNDVSHLPRK--EKKLRKMFGVPDEEKNVVGYIRNILKSECDDPKKIPK 159
Query: 341 M 343
+
Sbjct: 160 I 160
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 74.1 bits (174), Expect = 2e-12
Identities = 43/83 (51%), Positives = 54/83 (65%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
DKQGFPMKQGVLT+ R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 57 DKQGFPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 115
Query: 182 GAQEIPGLTDGNVPRRLGPKRAS 250
P RLGP R+S
Sbjct: 116 NPS----------PCRLGPVRSS 128
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 70.1 bits (164), Expect = 4e-11
Identities = 41/94 (43%), Positives = 60/94 (63%), Gaps = 4/94 (4%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIV 175
DKQGFPMK+G+L+ SRV++L+ KG + R + GER RKSVRGCIV +SVL + ++
Sbjct: 57 DKQGFPMKEGILSPSRVKILLKKGSTGCRGYKMKKGERCRKSVRGCIVSPEISVLNIKLL 116
Query: 176 RKGAQEIPGLTDGNVPRRLGPKRAS--KTVSCST 271
++ +T+ N + L KR+S + V C T
Sbjct: 117 TNKNDDLL-ITNKNSEKTLTHKRSSNLRKVLCLT 149
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 51.2 bits (117), Expect = 2e-05
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Frame = +2
Query: 14 FPMKQGVLTNSRVRLLMSKGHS-CYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQ 190
F MKQ VL + RV LL++ HS Y+P R E S++ V +S+L +VI+ G +
Sbjct: 50 FSMKQEVLIHFRVHLLLNNLHSYIYKPLRTREMNYTSLQDA-VKLPISLLNMVIIINGRK 108
Query: 191 EIPGLTDGNVPRRLGPKRASKTVSCSTLAKKMMYVVMSSNACS---QPRKEKKMLNPDIR 361
+IPG T +R PKR + S S K ++ N S +P+ K +P IR
Sbjct: 109 DIPGQT-----KRWAPKRWRRIQSFSVSLKTVLSTKKPQNKDSKKPRPKTHKVQHSPHIR 163
Query: 362 HLRSR 376
+++
Sbjct: 164 QHKAQ 168
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 49.2 bits (112), Expect = 8e-05
Identities = 24/58 (41%), Positives = 37/58 (63%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIV 175
DK GFPM+ V RV++L+S+G +RPR GER++K+V G + N+ + + IV
Sbjct: 68 DKDGFPMRPDVHGPRRVKILLSRGPG-FRPRERGERRKKTVHGNTISPNIVQVNMKIV 124
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 49.2 bits (112), Expect = 8e-05
Identities = 24/61 (39%), Positives = 38/61 (62%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
D+ GFPM+ + +R RLL+S G +RP+ G RKRK VRG ++ ++ + V+V+
Sbjct: 57 DRDGFPMRPDLPGTARRRLLLSGGVG-FRPKEKGLRKRKGVRGRVISKDILQINTVVVKH 115
Query: 182 G 184
G
Sbjct: 116 G 116
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 48.4 bits (110), Expect = 1e-04
Identities = 22/43 (51%), Positives = 31/43 (72%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 130
DK GFPM+ + RVR+L+SKG +RP+ GER++K+VRG
Sbjct: 68 DKDGFPMRPDIHGPRRVRVLLSKGPG-FRPKEKGERRKKTVRG 109
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 46.0 bits (104), Expect = 7e-04
Identities = 30/68 (44%), Positives = 40/68 (58%)
Frame = +2
Query: 47 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 226
R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K P
Sbjct: 19 RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS----------PC 67
Query: 227 RLGPKRAS 250
RLGP R+S
Sbjct: 68 RLGPVRSS 75
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 44.4 bits (100), Expect = 0.002
Identities = 22/65 (33%), Positives = 39/65 (60%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
DK GFPMK+ V R + L++ G ++P + G R+RK+VRG + ++S + + + +
Sbjct: 54 DKNGFPMKEDVDGTRRFKSLVNGGTG-FKPTKKGLRRRKTVRGNTIADDISQINVKVSER 112
Query: 182 GAQEI 196
G Q +
Sbjct: 113 GEQTL 117
>UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S6e -
Sulfolobus solfataricus
Length = 214
Score = 42.7 bits (96), Expect = 0.007
Identities = 20/59 (33%), Positives = 36/59 (61%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVR 178
D GFPM+ V+ ++ ++L+S G + P +GER+RK++RG + + + +IVR
Sbjct: 157 DNSGFPMRFDVIGAAKRKILLS-GPPGFYPNENGERRRKTIRGNTISQEIVQINTIIVR 214
>UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2;
Desulfurococcales|Rep: 30S ribosomal protein S6e -
Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
Length = 217
Score = 40.3 bits (90), Expect = 0.037
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIV 175
D GFPM + + R+L+S G + PR GER+RK+VRG + ++ + VIV
Sbjct: 156 DNSGFPMLPSIPGPVKKRVLLS-GPPGFHPREKGERRRKTVRGNTITHDIVQINTVIV 212
>UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyrum
pernix|Rep: 30S ribosomal protein S6e - Aeropyrum pernix
Length = 235
Score = 40.3 bits (90), Expect = 0.037
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV 139
D G PM GV + R ++L++ G + PR GER+RKSVRG ++
Sbjct: 165 DATGIPMHPGVPGSGRYKVLLA-GPPGFHPRERGERRRKSVRGRMI 209
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 39.5 bits (88), Expect = 0.065
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
D+ GFPM+ + + R L+S G + PR GER+RK+VRG + ++ + IV++
Sbjct: 178 DESGFPMRPDIPGPVKKRALLS-GPPGFWPREKGERRRKTVRGNTISEDIVQINTKIVKQ 236
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 37.9 bits (84), Expect = 0.20
Identities = 18/67 (26%), Positives = 38/67 (56%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
D+ GF M+ + ++R+L+ +G Y + G R+RKS+RG + +++++ +V
Sbjct: 53 DRCGFAMRHDIHGAMKMRVLLKEGPG-YNVKEKGLRRRKSLRGNTISKDITLINTKVVEY 111
Query: 182 GAQEIPG 202
G+ + G
Sbjct: 112 GSAPLGG 118
>UniRef50_Q6DFG0 Cluster: Rho GTPase-activating protein 21-A; n=2;
Xenopus laevis|Rep: Rho GTPase-activating protein 21-A -
Xenopus laevis (African clawed frog)
Length = 1926
Score = 37.5 bits (83), Expect = 0.26
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +2
Query: 173 VRKGAQEIPGLTDGNVPRRLGPKRAS--KTVSCSTLAKKMMYVVMSSNACSQPRKEKKML 346
V+ A+ P T+G++ RL +R S K + C TL++K + + + CS K ++ L
Sbjct: 1639 VQANAEGSPSCTEGSITPRLDTRRFSSHKLIECDTLSRKKSVRLKTDSECSAESKNEETL 1698
Query: 347 NPDIRHLRSRG*SPL 391
+ D + + SP+
Sbjct: 1699 S-DAHEVMKKSRSPI 1712
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 36.7 bits (81), Expect = 0.45
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLM 64
DKQGFPMKQ VLT+ R+ LL+
Sbjct: 57 DKQGFPMKQDVLTHDRIHLLL 77
Score = 36.7 bits (81), Expect = 0.45
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 188 QEIPGLTDGNVPRRLGPKRASKTVSCSTLAKK 283
++IPGLTD PR +GPKRAS+ L+K+
Sbjct: 80 KDIPGLTDTTEPRHVGPKRASRIRKLFNLSKE 111
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 36.7 bits (81), Expect = 0.45
Identities = 22/68 (32%), Positives = 37/68 (54%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
D G PM++ V + + +L+ +G + + P DGERKR +VRG V ++ L + I
Sbjct: 57 DDAGRPMREDVDGSDLMEVLL-EGGAGFNPDEDGERKRVTVRGKEVSEAVAQLNVAIDEH 115
Query: 182 GAQEIPGL 205
G + + L
Sbjct: 116 GEEPVAEL 123
>UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 136
Score = 34.3 bits (75), Expect = 2.4
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +2
Query: 2 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
D GF MK + R R+L + G Y P+ G+R+RK +RG + ++ + +V
Sbjct: 57 DGSGFVMKPDLPGPRRQRILTATGVG-YVPKLPGQRRRKMMRGKEIAPDIVQVNAKVVEY 115
Query: 182 GAQEIPGL 205
G++ I L
Sbjct: 116 GSKSIKAL 123
>UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcina
acetivorans|Rep: Glycosyltransferase - Methanosarcina
acetivorans
Length = 812
Score = 33.9 bits (74), Expect = 3.2
Identities = 13/61 (21%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 17 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV-DANLSVLALVIVRKGAQE 193
P K+ ++T++R ++L+ +SCY PR G+ + ++ + + ++++ +++ K Q
Sbjct: 405 PAKKNIITSNREKILVLATYSCYPPRGGGQHRLYNIYSLLAKEFDVTICSIIEANKQYQN 464
Query: 194 I 196
+
Sbjct: 465 L 465
>UniRef50_A0UBB5 Cluster: Putative uncharacterized protein; n=1;
Burkholderia multivorans ATCC 17616|Rep: Putative
uncharacterized protein - Burkholderia multivorans ATCC
17616
Length = 165
Score = 32.7 bits (71), Expect = 7.4
Identities = 24/88 (27%), Positives = 33/88 (37%)
Frame = +2
Query: 71 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 250
GH+ R R R R+ GC +DA L + A P RR+GP RA
Sbjct: 77 GHAEQRRGRHRRRYRREHAGCGIDAERRERRLTDASRRAVRAPLRRPVGARRRVGPCRAR 136
Query: 251 KTVSCSTLAKKMMYVVMSSNACSQPRKE 334
+ V + C+QP +E
Sbjct: 137 RMKDLQGPCSDSRSGVPARRRCAQPGQE 164
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,939,805
Number of Sequences: 1657284
Number of extensions: 10850996
Number of successful extensions: 31545
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 30654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31524
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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