Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40555
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   136   2e-33
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   136   2e-33
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    27   2.2  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   9.0  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  136 bits (330), Expect = 2e-33
 Identities = 66/94 (70%), Positives = 75/94 (79%)
 Frame = +2

Query: 2   DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
           DKQGFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++
Sbjct: 57  DKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQ 116

Query: 182 GAQEIPGLTDGNVPRRLGPKRASKTVSCSTLAKK 283
           G Q+IPGLTD  VP+RLGPKRASK      L+K+
Sbjct: 117 GEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKE 150



 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 42/85 (49%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 RKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXX 432
           R+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVTP  LQ          
Sbjct: 142 RRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKR 198

Query: 433 XXXXXXXSSEAEYAKLLAQRKKESK 507
                     AE+A+L+A+R  E+K
Sbjct: 199 RQAEKNREEAAEFAQLMAKRVAEAK 223


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  136 bits (329), Expect = 2e-33
 Identities = 65/94 (69%), Positives = 75/94 (79%)
 Frame = +2

Query: 2   DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 181
           DKQGFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++
Sbjct: 57  DKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQ 116

Query: 182 GAQEIPGLTDGNVPRRLGPKRASKTVSCSTLAKK 283
           G Q+IPGLTD  VP+RLGPKRASK      L+K+
Sbjct: 117 GEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKE 150



 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 42/85 (49%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 RKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXX 432
           R+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVTP  LQ          
Sbjct: 142 RRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKR 198

Query: 433 XXXXXXXSSEAEYAKLLAQRKKESK 507
                     AE+A+L+A+R  E+K
Sbjct: 199 RQAEKNREEAAEFAQLMAKRVAEAK 223


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 279 FAKVEQLTVLEARLGPRRRGTFPSVNPGISWAPLRTITRAKTERLASTIHPRT 121
           FA  EQL +LE  L PR+  + P  N       L T+   +  R+ + + P T
Sbjct: 334 FATPEQLALLEKALPPRKIESAPK-NAHTEECVLATVDPTEKVRIDNNVDPTT 385


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 457 SEAEYAKLLAQRKKESKGVARKSSNAGGQLQCVIPRAL 570
           S  +  K  A++KKE K   +  S+ G   QC+  + L
Sbjct: 259 SPVDQKKSKAKKKKEQKWTLKFESDKGTSTQCITHQPL 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,161
Number of Sequences: 5004
Number of extensions: 43134
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)