Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40555
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   124   8e-29
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   122   3e-28
02_05_0956 - 33064104-33066425                                         28   5.3  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  124 bits (298), Expect = 8e-29
 Identities = 62/95 (65%), Positives = 72/95 (75%), Gaps = 2/95 (2%)
 Frame = +2

Query: 2   DKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIV 175
           DKQGFPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV
Sbjct: 57  DKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIV 116

Query: 176 RKGAQEIPGLTDGNVPRRLGPKRASKTVSCSTLAK 280
           +KG  ++PGLTD   PR  GPKRASK      LAK
Sbjct: 117 KKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAK 151



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 42/86 (48%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
 Frame = +1

Query: 256 RKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXX 429
           RKLFNL+K+DDVR+YV   +R    K GK+ +    KAPKIQRLVTP+ LQ         
Sbjct: 144 RKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQRLVTPLTLQRKRARIAQK 199

Query: 430 XXXXXXXXSSEAEYAKLLAQRKKESK 507
                   S  AEY KLLAQR KE +
Sbjct: 200 KQRIAKKKSEAAEYQKLLAQRLKEQR 225


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  122 bits (293), Expect = 3e-28
 Identities = 61/95 (64%), Positives = 71/95 (74%), Gaps = 2/95 (2%)
 Frame = +2

Query: 2   DKQGFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIV 175
           DKQGFPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV
Sbjct: 57  DKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIV 116

Query: 176 RKGAQEIPGLTDGNVPRRLGPKRASKTVSCSTLAK 280
           +KG  ++PGLTD   PR  GPKRASK      L+K
Sbjct: 117 KKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSK 151



 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 43/86 (50%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
 Frame = +1

Query: 256 RKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXX 429
           RKLFNLSK+DDVR+YV   +R    K GK+ +    KAPKIQRLVTP+ LQ         
Sbjct: 144 RKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQRLVTPLTLQRKRARIADK 199

Query: 430 XXXXXXXXSSEAEYAKLLAQRKKESK 507
                   S  AEY KLLAQR KE +
Sbjct: 200 KKRIAKKKSEAAEYQKLLAQRLKEQR 225


>02_05_0956 - 33064104-33066425
          Length = 773

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 327 LGWEHAFDDITTYIIFFAKV 268
           +G EHA DD++TYII  A V
Sbjct: 23  VGVEHATDDVSTYIIHVAHV 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,975,640
Number of Sequences: 37544
Number of extensions: 311037
Number of successful extensions: 868
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)