Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40553
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyce...    27   2.4  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.1  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    26   5.5  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   7.2  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   9.5  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   9.5  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   9.5  

>SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 178

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -3

Query: 797 VIPPPTLYQHYILTSDDLMATTRTLHVVKK---LKQRDGKTKKCRRSKNFENLI 645
           +I PP +Y  +  T+DD +   R  H   K   L + D  +++    K++ N I
Sbjct: 119 IILPPGIYHRFTTTTDDYIHAMRLFHENPKWIALSRTDSTSEELDARKSYLNSI 172


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 521 WVTGFIRLTGITTELARRRYINQF 592
           W+T  I + GITT + ++R + ++
Sbjct: 103 WITFLIAIVGITTSILKKRMLKEY 126


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 380 PSVEVYNRTQSPRDSAPVYRWRHGARCGTGHLFGSGFQVKSINFQFKPHFFFSNHWW 210
           P V  +NR Q+   + P+Y  R+  R   G +    F+ K ++ +    F+ +N W+
Sbjct: 46  PLVRYWNRKQN---NLPIYIGRYTERYNGGDVSAIVFRSKVVSRRHAQIFYENNTWY 99


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 330 RSRVPRGLRAIVNFDRRALRQPHRGP 407
           RSR P G     ++DRR+ ++ HR P
Sbjct: 146 RSRSPDGRSRSPDYDRRSPKRNHRSP 171


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 152 YHHPAYFRREAVMRFGS 102
           Y HP  FR  AV+ FGS
Sbjct: 249 YFHPHRFRSRAVLEFGS 265


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 602 LLTCT-IENFTPQIDR*DSQSFCSGDIFLFYHHVVLVF 712
           LLTC  I+N TP      ++++C G+   F+ +V   F
Sbjct: 64  LLTCNDIKNITPANQCRFAKAYCKGEASGFFDYVEFYF 101


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 598 RPELVDVPAPSQFRSYAGETDE---ASDPSVE 512
           R +  D P+P + RSY+ E +E   +SD S E
Sbjct: 310 RSKYADTPSPRRSRSYSDEDEESVYSSDVSTE 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,654
Number of Sequences: 5004
Number of extensions: 68747
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)